CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41426	Soybean	cytosol	93.81	93.81
KRH49052	Soybean	cytosol	82.74	83.01
VIT_11s0016g02380.t01	Wine grape	cytosol	73.94	74.18
CDY70340	Canola	cytosol	69.38	70.53
PGSC0003DMT400005971	Potato	cytosol	69.06	70.43
AT2G19590.1	Thale cress	cytosol	70.03	69.35
Solyc07g026650.2.1	Tomato	cytosol	67.43	68.77
Bra031090.1-P	Field mustard	cytosol	67.1	68.21
CDY58326	Canola	cytoskeleton, cytosol, peroxisome	68.73	68.06
CDX81937	Canola	cytosol	68.73	68.06
CDY21655	Canola	cytosol	67.75	67.1
CDX68962	Canola	cytosol	19.87	59.8
GSMUA_Achr6P00870_001	Banana	cytosol	56.35	59.04
Os06t0573900-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	40.39	57.41
HORVU7Hr1G086650.1	Barley	cytosol	54.72	57.34
TraesCS7B01G264000.1	Wheat	cytoskeleton, cytosol, peroxisome	54.4	57.0
TraesCS7A01G363900.1	Wheat	cytoskeleton, cytosol, peroxisome	54.4	57.0
OQU76609	Sorghum	cytosol	54.07	56.66
KRH73354	Soybean	cytosol	36.16	56.35
TraesCS7D01G359300.1	Wheat	cytoskeleton, cytosol, peroxisome	53.75	56.31
Zm00001d005927_P001	Maize	cytosol	41.37	56.19
Zm00001d015860_P001	Maize	cytosol	42.02	55.13
Zm00001d036955_P001	Maize	cytosol	52.12	54.61
KRH14791	Soybean	cytosol	50.49	50.49
KRH14788	Soybean	cytosol	50.16	50.16
KRH14787	Soybean	cytosol	49.84	49.84
Zm00001d011208_P001	Maize	cytosol	50.81	49.21
KRH73352	Soybean	cytosol	49.19	49.19
KRH14794	Soybean	nucleus	50.16	48.89
Os01t0580500-01	Rice	cytosol	49.51	48.72
KRH41775	Soybean	cytosol	49.19	48.71
OQU87044	Sorghum	cytosol	50.81	48.6
TraesCS7D01G516200.1	Wheat	cytosol	50.16	48.43
KRH73345	Soybean	nucleus	49.51	48.25
TraesCS7B01G444900.1	Wheat	cytosol	49.84	48.11
GSMUA_Achr5P09690_001	Banana	cytosol	53.75	48.1
KRH53298	Soybean	nucleus	47.56	47.56
HORVU7Hr1G116830.1	Barley	cytosol	49.19	47.48
KRH64615	Soybean	cytosol	47.23	47.08
KRH36520	Soybean	cytosol	47.56	45.91
KRH11502	Soybean	cytosol	47.56	45.91
KRH02009	Soybean	cytosol	47.23	45.45
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	46.25	44.65
KRH73355	Soybean	cytosol	10.42	34.41

Protein Annotations

EntrezGene:100794816	MapMan:11.5.1.2	Gene3D:2.60.120.330	UniProt:A0A0R0K553	EMBL:ACUP02003351	ncoils:Coil
InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_05G222400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	EnsemblPlants:KRH60136	ProteinID:KRH60136	ProteinID:KRH60136.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF103	SUPFAM:SSF51197	UniParc:UPI000189D309

Description

hypothetical protein

Coordinates

chr5:-:40175192..40177137

Molecular Weight (calculated)

34810.6 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.453

Length

307 amino acids

Sequence
(BLAST)

001: MEIPVIDFSK LNGDKRGDTM ALLHEACEKW GCFMVENHEI DTQLMGKVKQ LINAYYEENL KESFYQSEIA KRLEKQQNTS DIDWESTFFI WHRPTSNINE
101: ISNISQELCQ TMDEYIAQLL KLGEKLSELM SENLGLEKDY IKKAFSGNGE GPAVGTKVAK YPQCPRPELV RGLREHTDAG GIILLLQDDE VPGLEFFKDG
201: KWVEIPPSKN NAIFVNTGDQ VEVLSNGLYR SVVHRVMPDN NGSRISIATF YNPIGDAIIS PAPKLLYPSN FRYGDYLKLY GSTKFGEKAP RFESMKNMIN
301: GHKIIPA

Best Arabidopsis Sequence Match ( AT2G19590.1 )
(BLAST)

001: MVLIKEREME IPVIDFAELD GEKRSKTMSL LDHACDKWGF FMVDNHGIDK ELMEKVKKMI NSHYEEHLKE KFYQSEMVKA LSEGKTSDAD WESSFFISHK
101: PTSNICQIPN ISEELSKTMD EYVCQLHKFA ERLSKLMCEN LGLDQEDIMN AFSGPKGPAF GTKVAKYPEC PRPELMRGLR EHTDAGGIIL LLQDDQVPGL
201: EFFKDGKWVP IPPSKNNTIF VNTGDQLEIL SNGRYKSVVH RVMTVKHGSR LSIATFYNPA GDAIISPAPK LLYPSGYRFQ DYLKLYSTTK FGDKGPRLET
301: MKKMGNADSA

Arabidopsis Description

ACO11-aminocyclopropane-1-carboxylate oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.