CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 3
peroxisome 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62380.1	KRH22291	AT2G42580.1	19000166
AT1G62380.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02009	Soybean	cytosol	96.86	96.55
KRH11502	Soybean	cytosol	85.85	85.85
KRH36520	Soybean	cytosol	85.85	85.85
Solyc07g049530.2.1	Tomato	nucleus	79.87	80.63
Solyc02g036350.2.1	Tomato	extracellular	80.82	80.56
PGSC0003DMT400055332	Potato	cytosol	80.82	80.56
PGSC0003DMT400036081	Potato	cytosol	79.25	79.75
Solyc02g081190.2.1	Tomato	cytosol	80.19	79.69
Solyc07g049550.2.1	Tomato	nucleus	78.93	79.43
Solyc12g005940.1.1	Tomato	cytosol	78.93	79.43
KRH73354	Soybean	cytosol	49.06	79.19
PGSC0003DMT400043087	Potato	cytosol	79.56	79.06
KRH41775	Soybean	cytosol	75.47	77.42
KRH73352	Soybean	cytosol	74.53	77.2
KRH73345	Soybean	nucleus	76.42	77.14
KRH14794	Soybean	nucleus	76.1	76.83
KRH14791	Soybean	cytosol	73.27	75.9
KRH14788	Soybean	cytosol	72.96	75.57
KRH14787	Soybean	cytosol	72.01	74.59
CDY32039	Canola	cytosol	72.64	72.19
Bra034504.1-P	Field mustard	cytosol	72.64	72.19
AT1G12010.1	Thale cress	cytosol	72.33	71.88
Bra027049.1-P	Field mustard	cytosol	72.33	71.88
CDY19546	Canola	cytosol	72.33	71.88
CDY12944	Canola	cytosol	72.33	71.88
CDY08654	Canola	cytosol	72.33	71.88
CDY66260	Canola	cytosol	72.33	71.65
Bra031798.1-P	Field mustard	cytosol	72.33	71.65
Bra019734.1-P	Field mustard	cytosol	72.01	71.56
CDY34603	Canola	cytosol	72.01	71.34
AT1G62380.1	Thale cress	cytosol	70.75	70.31
KRH73355	Soybean	cytosol	20.44	69.89
KRH53298	Soybean	nucleus	51.57	53.42
KRH64615	Soybean	cytosol	51.57	53.25
KRH41426	Soybean	cytosol	45.28	46.91
KRH60136	Soybean	endoplasmic reticulum	44.65	46.25
KRH49052	Soybean	cytosol	43.08	44.77
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.19	36.92
Zm00001d044978_P001	Maize	extracellular	5.03	13.01

Protein Annotations

EntrezGene:100784459	MapMan:11.5.1.2	Gene3D:2.60.120.330	EMBL:ACUP02004729	InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_07G264200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009693	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	UniProt:I1KNH9
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EnsemblPlants:KRH51147	ProteinID:KRH51147	ProteinID:KRH51147.1
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF383
SUPFAM:SSF51197	UniParc:UPI0002339083	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:43854062..43856308

Molecular Weight (calculated)

36020.4 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.313

Length

318 amino acids

Sequence
(BLAST)

001: MEKFPVVDMG NLNNEERSAT MEIIKDACEN WGFFELVNHG ISIELMDTVE RMTKEHYKKC MEQRFKEMVA SKGLESAQSE INDLDWESTF FLRHLPASNI
101: SEIPDLDEDY RKVMKDFAVE LEELAELVLD LLCENLGLEK GYLKKVFYGS KGPNFGTKVS NYPPCPKPEL IKGLRAHTDA GGIILLFQDH KVSGLQLLKD
201: GHWIDVLPMR HSIVINLGDQ LEVITNGKYK SVMHRVITQT DGNRMSIASF YNPGNDALIA PAPALVKEDE TSQVYPKFVF DDYMKLYAGL KFQAKEPRFQ
301: AMKATESSNI NLGPIATV

Best Arabidopsis Sequence Match ( AT1G05010.1 )
(BLAST)

001: MESFPIINLE KLNGEERAIT MEKIKDACEN WGFFECVNHG ISLELLDKVE KMTKEHYKKC MEERFKESIK NRGLDSLRSE VNDVDWESTF YLKHLPVSNI
101: SDVPDLDDDY RTLMKDFAGK IEKLSEELLD LLCENLGLEK GYLKKVFYGS KRPTFGTKVS NYPPCPNPDL VKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GEWVDVPPVK HSIVVNLGDQ LEVITNGKYK SVEHRVLSQT DGEGRMSIAS FYNPGSDSVI FPAPELIGKE AEKEKKENYP RFVFEDYMKL YSAVKFQAKE
301: PRFEAMKAME TTVANNVGPL ATA

Arabidopsis Description

ACO41-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.