Factsheet for Solyc07g049530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049550.2.1	Tomato	nucleus	94.6	94.3
Solyc12g005940.1.1	Tomato	cytosol	90.16	89.87
KRH11502	Soybean	cytosol	81.27	80.5
KRH36520	Soybean	cytosol	80.95	80.19
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	80.63	79.87
Solyc02g036350.2.1	Tomato	extracellular	80.63	79.62
KRH02009	Soybean	cytosol	80.63	79.62
Solyc02g081190.2.1	Tomato	cytosol	79.68	78.44
Bra034504.1-P	Field mustard	cytosol	72.38	71.25
CDY32039	Canola	cytosol	72.38	71.25
CDY08654	Canola	cytosol	72.06	70.94
AT1G12010.1	Thale cress	cytosol	71.11	70.0
Bra027049.1-P	Field mustard	cytosol	71.11	70.0
CDY12944	Canola	cytosol	71.11	70.0
CDY19546	Canola	cytosol	71.11	70.0
AT1G62380.1	Thale cress	cytosol	70.79	69.69
Bra019734.1-P	Field mustard	cytosol	70.79	69.69
CDY66260	Canola	cytosol	70.48	69.16
Bra031798.1-P	Field mustard	cytosol	70.48	69.16
CDY34603	Canola	cytosol	70.16	68.85
Solyc07g026650.2.1	Tomato	cytosol	47.3	49.5
Solyc06g060070.2.1	Tomato	cytosol	47.94	48.09
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.16	36.54
Zm00001d044978_P001	Maize	extracellular	5.08	13.01

Protein Annotations

MapMan:11.5.1.2	Gene3D:2.60.120.330	ProteinID:CAA41212.1	ncoils:Coil	InterPro:DIOX_N	UniProt:E3VWN6
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009693	GO:GO:0009815	GO:GO:0009835	GO:GO:0009987
GO:GO:0016491	GO:GO:0030246	GO:GO:0031418	GO:GO:0046872	GO:GO:0055114	EMBL:HQ322499
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	UniProt:P05116	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF381	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc07g049530.2
EnsemblPlants:Solyc07g049530.2.1	UniParc:UPI000002DF11	EMBL:X04792	SEG:seg	:	:

Description

ACO11-aminocyclopropane-1-carboxylic acid oxidase [Source:UniProtKB/TrEMBL;Acc:E3VWN6]

Coordinates

chr7:+:59830720..59832891

Molecular Weight (calculated)

35814.9 Da

IEP (calculated)

4.891

GRAVY (calculated)

-0.412

Length

315 amino acids

Sequence
(BLAST)

001: MENFPIINLE KLNGDERANT MEMIKDACEN WGFFELVNHG IPHEVMDTVE KMTKGHYKKC MEQRFKELVA SKGLEAVQAE VTDLDWESTF FLRHLPTSNI
101: SQVPDLDEEY REVMRDFAKR LEKLAEELLD LLCENLGLEK GYLKNAFYGS KGPNFGTKVS NYPPCPKPDL IKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: EQWIDVPPMR HSIVVNLGDQ LEVITNGKYK SVLHRVIAQT DGTRMSLASF YNPGSDAVIY PAKTLVEKEA EESTQVYPKF VFDDYMKLYA GLKFQAKEPR
301: FEAMKAMESD PIASA

Best Arabidopsis Sequence Match ( AT1G05010.1 )
(BLAST)

001: MESFPIINLE KLNGEERAIT MEKIKDACEN WGFFECVNHG ISLELLDKVE KMTKEHYKKC MEERFKESIK NRGLDSLRSE VNDVDWESTF YLKHLPVSNI
101: SDVPDLDDDY RTLMKDFAGK IEKLSEELLD LLCENLGLEK GYLKKVFYGS KRPTFGTKVS NYPPCPNPDL VKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GEWVDVPPVK HSIVVNLGDQ LEVITNGKYK SVEHRVLSQT DGEGRMSIAS FYNPGSDSVI FPAPELIGKE AEKEKKENYP RFVFEDYMKL YSAVKFQAKE
301: PRFEAMKAME TTVANNVGPL ATA

Arabidopsis Description

ACO41-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.