Factsheet for Solyc06g060070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030740	Potato	cytosol	96.18	96.49
VIT_18s0001g01840.t01	Wine grape	cytosol	69.43	74.66
KRH53298	Soybean	nucleus	72.61	74.27
CDX88361	Canola	cytosol	19.11	74.07
KRH64615	Soybean	cytosol	72.29	73.7
AT1G77330.1	Thale cress	cytoskeleton, cytosol, peroxisome	68.15	69.71
CDY38352	Canola	cytosol	68.15	69.48
GSMUA_Achr6P12910_001	Banana	cytosol	68.15	69.48
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	67.83	69.38
CDY72562	Canola	cytosol	51.59	69.23
Bra008302.1-P	Field mustard	cytosol	62.42	69.01
CDX88362	Canola	cytoskeleton, cytosol, peroxisome	61.47	67.96
CDX88360	Canola	cytosol	20.38	67.37
GSMUA_AchrUn_...	Banana	cytosol	57.96	66.91
GSMUA_AchrUn_...	Banana	cytosol	57.96	66.67
Bra003687.1-P	Field mustard	cytosol	64.65	66.56
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	66.88	66.46
Bra015675.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	63.69	64.72
GSMUA_Achr10P...	Banana	cytosol	67.83	63.96
HORVU1Hr1G020450.1	Barley	cytosol	62.74	63.96
TraesCS1B01G117400.1	Wheat	cytosol	62.42	63.64
TraesCS1D01G098000.1	Wheat	cytosol	62.42	63.64
TraesCS1A01G089500.1	Wheat	cytosol	62.1	63.31
GSMUA_AchrUn_...	Banana	cytosol	31.21	63.23
HORVU1Hr1G020410.2	Barley	cytosol	62.42	63.23
TraesCS1A01G089600.1	Wheat	cytosol	61.78	62.99
TraesCS1B01G117500.1	Wheat	cytosol	61.78	62.99
Zm00001d024852_P001	Maize	cytosol	63.06	62.86
TraesCS1D01G098100.1	Wheat	cytosol	61.47	62.66
Zm00001d024850_P001	Maize	cytosol	62.42	62.22
Zm00001d024851_P001	Maize	cytosol	62.42	62.22
Zm00001d024843_P001	Maize	cytosol	62.1	62.1
GSMUA_AchrUn_...	Banana	cytosol	30.57	61.94
EES17716	Sorghum	cytosol	61.78	61.39
Os05t0149400-01	Rice	plasma membrane	60.19	61.36
TraesCS4A01G221300.1	Wheat	cytosol	61.15	61.34
EES19027	Sorghum	cytosol	61.47	61.08
TraesCS4D01G095500.1	Wheat	cytosol	61.15	60.76
TraesCSU01G067700.1	Wheat	cytosol	61.15	60.76
HORVU4Hr1G017660.1	Barley	cytosol	60.83	60.44
Os11t0186900-01	Rice	cytosol	58.28	59.22
Zm00001d004719_P001	Maize	cytosol	58.28	59.03
Zm00001d004718_P001	Maize	cytosol	58.28	59.03
Zm00001d000163_P001	Maize	extracellular	58.28	58.47
EES09442	Sorghum	cytosol	58.92	58.36
EES08130	Sorghum	cytosol	57.96	57.59
Os05t0149300-00	Rice	cytosol, peroxisome	33.44	56.45
Zm00001d024853_P001	Maize	plastid	62.42	55.06
HORVU1Hr1G020430.1	Barley	peroxisome	50.64	51.29
Solyc02g036350.2.1	Tomato	extracellular	49.04	48.28
Solyc07g049530.2.1	Tomato	nucleus	48.09	47.94
Solyc07g049550.2.1	Tomato	nucleus	48.09	47.78
Solyc12g005940.1.1	Tomato	cytosol	47.13	46.84
Solyc02g081190.2.1	Tomato	cytosol	47.13	46.25
Solyc07g026650.2.1	Tomato	cytosol	42.68	44.52
GSMUA_AchrUn_...	Banana	cytosol	59.24	32.35

Protein Annotations

MapMan:11.5.1.2	Gene3D:2.60.120.330	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009693	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
UniProt:K4C6I8	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF189	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc06g060070.2	EnsemblPlants:Solyc06g060070.2.1	UniParc:UPI0002765F64	SEG:seg

Description

No Description!

Coordinates

chr6:-:37978857..37981633

Molecular Weight (calculated)

35830.7 Da

IEP (calculated)

5.769

GRAVY (calculated)

-0.457

Length

314 amino acids

Sequence
(BLAST)

001: MTTIPVIDFS KLYGEERAQT LAQISKGCEE WGFFQLVNHG IPVELLERVK KVGEECFKLE REEVFNKSRV VNLLNEFVES NKNGKVENVD WEDVFLLTDD
101: NCNQWPSKTP QFKETMKEYR SEVKKLAERV MEVMDENLGL SKGYIKKAFN NNNNNDAFFG TKVSHYPPCP HPEKVNGLRA HTDAGGVILL FQDDQVDGLQ
201: ILKNGQWIDV PPIPNAIVIN TGDQIEVLSN GKYKSVWHRV LSKPDGNRRS IASFYNPSLK ATISPAPELL ILEEKKVDQL IATYPTFVFG NYMNVYNEQK
301: FLPKEPRFQA VAAI

Best Arabidopsis Sequence Match ( AT1G77330.1 )
(BLAST)

001: MAIPVIDFSK LNGEEREKTL SEIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSNPV KLLNELVQKN SGEKLENVDW EDVFTLLDHN
101: QNEWPSNIKE TMGEYREEVR KLASKMMEVM DENLGLPKGY IKKAFNEGME DGEETAFFGT KVSHYPPCPH PELVNGLRAH TDAGGVVLLF QDDEYDGLQV
201: LKDGEWIDVQ PLPNAIVINT GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAVAEE EGSEKKYPKF VFGDYMDVYA NQKFMPKEPR
301: FLAVKSL

Arabidopsis Description

1-aminocyclopropane-1-carboxylate oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPW4]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.