Factsheet for VIT_18s0001g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88361	Canola	cytosol	21.58	77.78
KRH64615	Soybean	cytosol	81.85	77.6
KRH53298	Soybean	nucleus	81.16	77.2
Solyc06g060070.2.1	Tomato	cytosol	74.66	69.43
PGSC0003DMT400030740	Potato	cytosol	74.32	69.33
CDY72562	Canola	cytosol	55.48	69.23
AT1G77330.1	Thale cress	cytoskeleton, cytosol, peroxisome	72.6	69.06
CDY38352	Canola	cytosol	72.6	68.83
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	72.26	68.73
GSMUA_Achr6P12910_001	Banana	cytosol	71.92	68.18
Bra008302.1-P	Field mustard	cytosol	65.75	67.61
GSMUA_AchrUn_...	Banana	cytosol	62.33	66.91
PGSC0003DMT400015435	Potato	cytoskeleton, cytosol, peroxisome	72.95	66.77
CDX88360	Canola	cytosol	21.58	66.32
Bra003687.1-P	Field mustard	cytosol	69.18	66.23
CDX88362	Canola	cytoskeleton, cytosol, peroxisome	64.38	66.2
GSMUA_AchrUn_...	Banana	cytosol	61.3	65.57
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	70.89	65.51
Bra015675.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	66.78	63.11
GSMUA_Achr10P...	Banana	cytosol	71.92	63.06
TraesCS1D01G098000.1	Wheat	cytosol	64.73	61.36
TraesCS1B01G117400.1	Wheat	cytosol	64.73	61.36
Zm00001d024843_P001	Maize	cytosol	65.75	61.15
TraesCS1A01G089600.1	Wheat	cytosol	64.38	61.04
HORVU1Hr1G020450.1	Barley	cytosol	64.38	61.04
TraesCS1A01G089500.1	Wheat	cytosol	64.38	61.04
Zm00001d024852_P001	Maize	cytosol	65.75	60.95
TraesCS1B01G117500.1	Wheat	cytosol	64.04	60.71
TraesCS1D01G098100.1	Wheat	cytosol	63.7	60.39
VIT_00s2086g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	42.81	60.39
HORVU1Hr1G020410.2	Barley	cytosol	64.04	60.32
Zm00001d024850_P001	Maize	cytosol	65.07	60.32
Zm00001d024851_P001	Maize	cytosol	65.07	60.32
GSMUA_AchrUn_...	Banana	cytosol	31.85	60.0
TraesCS4A01G221300.1	Wheat	cytosol	64.04	59.74
Os11t0186900-01	Rice	cytosol	63.01	59.55
EES17716	Sorghum	cytosol	64.38	59.49
TraesCS4D01G095500.1	Wheat	cytosol	64.38	59.49
TraesCSU01G067700.1	Wheat	cytosol	64.38	59.49
Zm00001d004718_P001	Maize	cytosol	62.67	59.03
Zm00001d004719_P001	Maize	cytosol	62.67	59.03
EES09442	Sorghum	cytosol	64.04	58.99
EES19027	Sorghum	cytosol	63.7	58.86
HORVU4Hr1G017660.1	Barley	cytosol	63.7	58.86
Os05t0149400-01	Rice	plasma membrane	61.99	58.77
Zm00001d000163_P001	Maize	extracellular	62.67	58.47
EES08130	Sorghum	cytosol	63.01	58.23
GSMUA_AchrUn_...	Banana	cytosol	30.82	58.06
Os05t0149300-00	Rice	cytosol, peroxisome	36.3	56.99
Zm00001d024853_P001	Maize	plastid	65.07	53.37
HORVU1Hr1G020430.1	Barley	peroxisome	51.37	48.39
VIT_12s0059g01380.t01	Wine grape	cytosol	51.03	46.86
VIT_11s0016g02380.t01	Wine grape	cytosol	46.92	44.77
GSMUA_AchrUn_...	Banana	cytosol	62.67	31.83

Protein Annotations

EntrezGene:100252394	wikigene:100252394	MapMan:11.5.1.2	Gene3D:2.60.120.330	ProteinID:CCB45456	ProteinID:CCB45456.1
ncoils:Coil	InterPro:DIOX_N	UniProt:F6H0I4	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009693	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
EntrezGene:LOC100252394	wikigene:LOC100252394	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF189	SUPFAM:SSF51197	UniParc:UPI0002109D2B	ArrayExpress:VIT_18s0001g01840	EnsemblPlantsGene:VIT_18s0001g01840
EnsemblPlants:VIT_18s0001g01840.t01	RefSeq:XP_002285881	RefSeq:XP_002285881.1	:	:	:

Description

No Description!

Coordinates

chr18:-:2347198..2348370

Molecular Weight (calculated)

33119.6 Da

IEP (calculated)

5.163

GRAVY (calculated)

-0.488

Length

292 amino acids

Sequence
(BLAST)

001: MARIANGCEE WGFFQLVNHG IPEELLERVK KVCSEFYKLE REEGFKDSRP IRLLNELVEK KSGEKLENVD WEDVITLVDD NEWPSKTPGF KETMAEYRKE
101: LKKLAEKVME VMDENLGLPK GYIKKAFNDG EGDNAFFGTK VSHYPPCPHS ELLNGLRAHT DAGGVILLFQ DDKVKGLQIL KDGEWIDVQP LPNSIVINTG
201: DQIEVLSNGK YKSVLHRVMT SPDGNRRSIA SFYNPPLKAT IAPAPQLVEK ANQDDLEIVQ AYPKFVFGDY MSVYAEQKFL PKEPRFHAVG AM

Best Arabidopsis Sequence Match ( AT1G77330.1 )
(BLAST)

001: MAIPVIDFSK LNGEEREKTL SEIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSNPV KLLNELVQKN SGEKLENVDW EDVFTLLDHN
101: QNEWPSNIKE TMGEYREEVR KLASKMMEVM DENLGLPKGY IKKAFNEGME DGEETAFFGT KVSHYPPCPH PELVNGLRAH TDAGGVVLLF QDDEYDGLQV
201: LKDGEWIDVQ PLPNAIVINT GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAVAEE EGSEKKYPKF VFGDYMDVYA NQKFMPKEPR
301: FLAVKSL

Arabidopsis Description

1-aminocyclopropane-1-carboxylate oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPW4]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.