Factsheet for PGSC0003DMT400015435

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
peroxisome 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030740	Potato	cytosol	76.8	78.27
CDX88361	Canola	cytosol	18.81	74.07
VIT_18s0001g01840.t01	Wine grape	cytosol	66.77	72.95
KRH53298	Soybean	nucleus	69.91	72.64
AT1G77330.1	Thale cress	cytoskeleton, cytosol, peroxisome	69.28	71.99
KRH64615	Soybean	cytosol	69.28	71.75
CDY72562	Canola	cytosol	52.35	71.37
CDY38352	Canola	cytosol	68.65	71.1
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	68.03	70.68
Bra008302.1-P	Field mustard	cytosol	62.07	69.72
CDX88362	Canola	cytoskeleton, cytosol, peroxisome	62.07	69.72
GSMUA_Achr6P12910_001	Banana	cytosol	67.08	69.48
CDX88360	Canola	cytosol	20.69	69.47
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	68.34	68.99
GSMUA_AchrUn_...	Banana	cytosol	58.62	68.75
Bra003687.1-P	Field mustard	cytosol	65.52	68.52
GSMUA_AchrUn_...	Banana	cytosol	58.31	68.13
Bra015675.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	65.52	67.64
GSMUA_AchrUn_...	Banana	cytosol	30.41	62.58
GSMUA_AchrUn_...	Banana	cytosol	30.09	61.94
TraesCS1B01G117400.1	Wheat	cytosol	59.56	61.69
TraesCS1A01G089500.1	Wheat	cytosol	59.56	61.69
TraesCS1D01G098000.1	Wheat	cytosol	59.56	61.69
TraesCS4A01G221300.1	Wheat	cytosol	60.5	61.66
TraesCS1B01G117500.1	Wheat	cytosol	59.25	61.36
TraesCS1A01G089600.1	Wheat	cytosol	59.25	61.36
HORVU1Hr1G020450.1	Barley	cytosol	59.25	61.36
GSMUA_Achr10P...	Banana	cytosol	63.95	61.26
TraesCS1D01G098100.1	Wheat	cytosol	58.93	61.04
HORVU1Hr1G020410.2	Barley	cytosol	59.25	60.97
TraesCSU01G067700.1	Wheat	cytosol	60.19	60.76
TraesCS4D01G095500.1	Wheat	cytosol	60.19	60.76
Os11t0186900-01	Rice	cytosol	58.62	60.52
HORVU4Hr1G017660.1	Barley	cytosol	59.56	60.13
Zm00001d024843_P001	Maize	cytosol	58.93	59.87
Zm00001d024852_P001	Maize	cytosol	58.93	59.68
Zm00001d004719_P001	Maize	cytosol	57.68	59.35
Zm00001d004718_P001	Maize	cytosol	57.68	59.35
Os05t0149400-01	Rice	plasma membrane	57.05	59.09
Zm00001d024850_P001	Maize	cytosol	58.31	59.05
Zm00001d024851_P001	Maize	cytosol	58.31	59.05
EES17716	Sorghum	cytosol	57.99	58.54
Zm00001d000163_P001	Maize	extracellular	57.37	58.47
EES09442	Sorghum	cytosol	57.99	58.36
EES19027	Sorghum	cytosol	57.68	58.23
EES08130	Sorghum	cytosol	56.74	57.28
Os05t0149300-00	Rice	cytosol, peroxisome	31.66	54.3
Zm00001d024853_P001	Maize	plastid	58.62	52.53
HORVU1Hr1G020430.1	Barley	peroxisome	47.65	49.03
PGSC0003DMT400036081	Potato	cytosol	47.65	48.1
PGSC0003DMT400055332	Potato	cytosol	47.34	47.34
PGSC0003DMT400043087	Potato	cytosol	46.71	46.56
PGSC0003DMT400005971	Potato	cytosol	42.32	44.85
GSMUA_AchrUn_...	Banana	cytosol	58.62	32.52

Protein Annotations

EntrezGene:102578788	MapMan:11.5.1.2	Gene3D:2.60.120.330	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1A612	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400006025	PGSC:PGSC0003DMG400006025	EnsemblPlants:PGSC0003DMT400015435	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF189	SUPFAM:SSF51197	UniParc:UPI000295AD34	RefSeq:XP_006351122.1	SEG:seg

Description

1-aminocyclopropane-1-carboxylic acid oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400006025]

Coordinates

chr11:-:8338897..8340887

Molecular Weight (calculated)

36318.7 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.609

Length

319 amino acids

Sequence
(BLAST)

001: MAIPVIDFSK LNGEERANTL AQIATSCEEW GFFQLVNHGI PVELLEKVKR VSSESFKKER EDNFNKSTAI NLLNEVEKNK SNNNKVENVD WEDVFLLTDD
101: NEWPSNIPQF REIMKEYRSE LKNLAKQVME IMDENLGLPK GYINKSFNNG EEGSENAFFG TKVSHYPPCP NPEMVNGLRA HTDAGGVILL FQDDQVDGLQ
201: ILKDGEWIDV QPIQNAIVIN TGDQIEVLSN GKYKSVWHRV LAKENGNRRS IASFYNPSLK ATIAPAPQLI HIDNDNNNDN NKVELISNYP AFKFGDYMNV
301: YSEQKFSPKE PRFQAVRAM

Best Arabidopsis Sequence Match ( AT1G77330.1 )
(BLAST)

001: MAIPVIDFSK LNGEEREKTL SEIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSNPV KLLNELVQKN SGEKLENVDW EDVFTLLDHN
101: QNEWPSNIKE TMGEYREEVR KLASKMMEVM DENLGLPKGY IKKAFNEGME DGEETAFFGT KVSHYPPCPH PELVNGLRAH TDAGGVVLLF QDDEYDGLQV
201: LKDGEWIDVQ PLPNAIVINT GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAVAEE EGSEKKYPKF VFGDYMDVYA NQKFMPKEPR
301: FLAVKSL

Arabidopsis Description

1-aminocyclopropane-1-carboxylate oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPW4]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.