CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008302.1-P	Field mustard	cytosol	95.07	95.07
CDX88361	Canola	cytosol	26.76	93.83
CDX88360	Canola	cytosol	30.63	91.58
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	99.65	89.56
CDY38352	Canola	cytosol	95.42	87.99
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	94.37	87.3
AT1G77330.1	Thale cress	cytoskeleton, cytosol, peroxisome	92.96	85.99
CDY72562	Canola	cytosol	65.14	79.06
KRH53298	Soybean	nucleus	71.83	66.45
KRH64615	Soybean	cytosol	70.42	64.94
VIT_18s0001g01840.t01	Wine grape	cytosol	66.2	64.38
GSMUA_Achr6P12910_001	Banana	cytosol	67.61	62.34
PGSC0003DMT400015435	Potato	cytoskeleton, cytosol, peroxisome	69.72	62.07
PGSC0003DMT400030740	Potato	cytosol	68.31	61.98
Solyc06g060070.2.1	Tomato	cytosol	67.96	61.47
GSMUA_AchrUn_...	Banana	cytosol	32.75	60.0
GSMUA_AchrUn_...	Banana	cytosol	56.34	58.82
GSMUA_AchrUn_...	Banana	cytosol	32.04	58.71
Zm00001d024852_P001	Maize	cytosol	64.79	58.41
GSMUA_AchrUn_...	Banana	cytosol	55.28	57.51
Zm00001d024851_P001	Maize	cytosol	63.73	57.46
Zm00001d024850_P001	Maize	cytosol	63.73	57.46
TraesCS1A01G089500.1	Wheat	cytosol	61.97	57.14
TraesCS1B01G117400.1	Wheat	cytosol	61.97	57.14
TraesCS1D01G098000.1	Wheat	cytosol	61.97	57.14
HORVU1Hr1G020450.1	Barley	cytosol	61.97	57.14
Os11t0186900-01	Rice	cytosol	61.97	56.96
TraesCS1A01G089600.1	Wheat	cytosol	61.62	56.82
TraesCS1B01G117500.1	Wheat	cytosol	61.62	56.82
TraesCS1D01G098100.1	Wheat	cytosol	61.62	56.82
Zm00001d004718_P001	Maize	cytosol	61.97	56.77
Zm00001d004719_P001	Maize	cytosol	61.97	56.77
Zm00001d024843_P001	Maize	cytosol	62.68	56.69
EES17716	Sorghum	cytosol	63.03	56.65
HORVU1Hr1G020410.2	Barley	cytosol	61.62	56.45
EES09442	Sorghum	cytosol	62.68	56.15
EES19027	Sorghum	cytosol	62.32	56.01
TraesCS4A01G221300.1	Wheat	cytosol	61.62	55.91
EES08130	Sorghum	cytosol	61.97	55.7
TraesCSU01G067700.1	Wheat	cytosol	61.62	55.38
HORVU4Hr1G017660.1	Barley	cytosol	61.62	55.38
Zm00001d000163_P001	Maize	extracellular	60.92	55.27
TraesCS4D01G095500.1	Wheat	cytosol	61.27	55.06
GSMUA_Achr10P...	Banana	cytosol	64.44	54.95
Os05t0149400-01	Rice	plasma membrane	59.51	54.87
Zm00001d024853_P001	Maize	plastid	63.73	50.84
Os05t0149300-00	Rice	cytosol, peroxisome	30.99	47.31
HORVU1Hr1G020430.1	Barley	peroxisome	47.54	43.55
CDY12944	Canola	cytosol	48.24	42.81
CDY19546	Canola	cytosol	48.24	42.81
CDY66260	Canola	cytosol	48.24	42.68
CDY08654	Canola	cytosol	47.89	42.5
CDY32039	Canola	cytosol	47.89	42.5
CDY34603	Canola	cytosol	47.89	42.37
CDY18281	Canola	cytosol	47.18	41.74
CDY53397	Canola	cytosol	46.83	41.43
CDY70340	Canola	cytosol	44.01	41.39
CDY21655	Canola	cytosol	45.07	41.29
CDY58326	Canola	cytoskeleton, cytosol, peroxisome	45.07	41.29
CDX81937	Canola	cytosol	44.72	40.97
CDX68962	Canola	cytosol	11.97	33.33
GSMUA_AchrUn_...	Banana	cytosol	56.34	27.83

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	GO:A0A078DHA8	EnsemblPlants:CDX88362	ProteinID:CDX88362	ProteinID:CDX88362.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00147884001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PANTHER:PTHR10209	PANTHER:PTHR10209:SF189	SUPFAM:SSF51197	UniParc:UPI0004EF1C7D

Description

BnaC06g38060D

Coordinates

chrLK031855:+:567500..568738

Molecular Weight (calculated)

32177.2 Da

IEP (calculated)

5.313

GRAVY (calculated)

-0.576

Length

284 amino acids

Sequence
(BLAST)

001: MAIPVIDFSK INGEEREKTL SDIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSTPV KLLNELLEQN SGEKIESVDW EDVFTLLDHN
101: QNEWPSNTSG LKEAMLEYRG EVRKLASKMM EVMDENLGLP KGYIKKAFNE GMEDGEEETA FFGTKVSHYP PCPRPELVNG LRAHTDAGGV PVHNAIVINT
201: GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAEEGS EKKYPKFVFG DYMDVYANQK FMPKEPRFLA VKTL

Best Arabidopsis Sequence Match ( AT1G77330.1 )
(BLAST)

001: MAIPVIDFSK LNGEEREKTL SEIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSNPV KLLNELVQKN SGEKLENVDW EDVFTLLDHN
101: QNEWPSNIKE TMGEYREEVR KLASKMMEVM DENLGLPKGY IKKAFNEGME DGEETAFFGT KVSHYPPCPH PELVNGLRAH TDAGGVVLLF QDDEYDGLQV
201: LKDGEWIDVQ PLPNAIVINT GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAVAEE EGSEKKYPKF VFGDYMDVYA NQKFMPKEPR
301: FLAVKSL

Arabidopsis Description

1-aminocyclopropane-1-carboxylate oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPW4]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.