Factsheet for PGSC0003DMT400030740

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060070.2.1	Tomato	cytosol	96.49	96.18
PGSC0003DMT400015435	Potato	cytoskeleton, cytosol, peroxisome	78.27	76.8
VIT_18s0001g01840.t01	Wine grape	cytosol	69.33	74.32
KRH53298	Soybean	nucleus	72.52	73.94
KRH64615	Soybean	cytosol	72.52	73.7
CDX88361	Canola	cytosol	18.85	72.84
AT1G77330.1	Thale cress	cytoskeleton, cytosol, peroxisome	69.01	70.36
CDY38352	Canola	cytosol	69.01	70.13
CDY72562	Canola	cytosol	52.4	70.09
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	68.69	70.03
GSMUA_Achr6P12910_001	Banana	cytosol	68.69	69.81
Bra008302.1-P	Field mustard	cytosol	62.94	69.37
CDX88362	Canola	cytoskeleton, cytosol, peroxisome	61.98	68.31
CDX88360	Canola	cytosol	20.45	67.37
GSMUA_AchrUn_...	Banana	cytosol	58.47	67.28
Bra003687.1-P	Field mustard	cytosol	65.5	67.21
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	67.73	67.09
GSMUA_AchrUn_...	Banana	cytosol	58.47	67.03
Bra015675.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	64.86	65.7
HORVU1Hr1G020450.1	Barley	cytosol	63.58	64.61
TraesCS1D01G098000.1	Wheat	cytosol	63.26	64.29
TraesCS1B01G117400.1	Wheat	cytosol	63.26	64.29
GSMUA_Achr10P...	Banana	cytosol	68.37	64.26
TraesCS1A01G089500.1	Wheat	cytosol	62.94	63.96
HORVU1Hr1G020410.2	Barley	cytosol	63.26	63.87
TraesCS1B01G117500.1	Wheat	cytosol	62.62	63.64
TraesCS1A01G089600.1	Wheat	cytosol	62.62	63.64
Zm00001d024852_P001	Maize	cytosol	63.9	63.49
GSMUA_AchrUn_...	Banana	cytosol	31.31	63.23
TraesCS1D01G098100.1	Wheat	cytosol	61.98	62.99
Zm00001d024851_P001	Maize	cytosol	63.26	62.86
Zm00001d024850_P001	Maize	cytosol	63.26	62.86
TraesCS4A01G221300.1	Wheat	cytosol	62.62	62.62
Zm00001d024843_P001	Maize	cytosol	62.62	62.42
TraesCSU01G067700.1	Wheat	cytosol	62.62	62.03
TraesCS4D01G095500.1	Wheat	cytosol	62.62	62.03
EES17716	Sorghum	cytosol	62.62	62.03
Os05t0149400-01	Rice	plasma membrane	61.02	62.01
GSMUA_AchrUn_...	Banana	cytosol	30.67	61.94
HORVU4Hr1G017660.1	Barley	cytosol	62.3	61.71
EES19027	Sorghum	cytosol	62.3	61.71
Os11t0186900-01	Rice	cytosol	60.06	60.84
Zm00001d004718_P001	Maize	cytosol	59.74	60.32
Zm00001d004719_P001	Maize	cytosol	59.74	60.32
Zm00001d000163_P001	Maize	extracellular	60.06	60.06
EES09442	Sorghum	cytosol	60.7	59.94
EES08130	Sorghum	cytosol	59.74	59.18
Os05t0149300-00	Rice	cytosol, peroxisome	32.91	55.38
Zm00001d024853_P001	Maize	plastid	62.94	55.34
HORVU1Hr1G020430.1	Barley	peroxisome	51.44	51.94
PGSC0003DMT400036081	Potato	cytosol	49.2	48.73
PGSC0003DMT400055332	Potato	cytosol	49.52	48.59
PGSC0003DMT400043087	Potato	cytosol	47.92	46.88
PGSC0003DMT400005971	Potato	cytosol	43.45	45.18
GSMUA_AchrUn_...	Banana	cytosol	59.74	32.52

Protein Annotations

EntrezGene:102582504	MapMan:11.5.1.2	Gene3D:2.60.120.330	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1AUP6	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400011776	PGSC:PGSC0003DMG400011776	EnsemblPlants:PGSC0003DMT400030740	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF189	SUPFAM:SSF51197	UniParc:UPI000296A068	RefSeq:XP_006365543.1	SEG:seg

Description

1-aminocyclopropane-1-carboxylic acid oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400011776]

Coordinates

chr6:-:42633180..42636899

Molecular Weight (calculated)

35499.2 Da

IEP (calculated)

5.475

GRAVY (calculated)

-0.451

Length

313 amino acids

Sequence
(BLAST)

001: MTTIPVIDFS KLDGEERAQT LAQISKGCEE WGFFQLVNHG IPVELLERVK KVGGECFKLE REEVFNKSRA VNLLNEFVES NKNGKVENVD WEDVFLLTDD
101: NHNQWPSNTP QFKETMNEYR SEVKKLAERV LEVMDENLGL SKGYIKKAFN NNNNGAFFGT KVSHYPPCPH PEKVNGLRAH TDAGGVILLF QDDQVDGLQI
201: LKDGQWIDVP PIPNAIVINT GDQIEVLSNG KYKSVWHRVL SKPDGNRRSI ASFYNPSLKA TISPAPELLI LEEKKVDQLI ATYPTFVFGN YMNVYNEQKF
301: LPKEPRFQAV AAI

Best Arabidopsis Sequence Match ( AT1G77330.1 )
(BLAST)

001: MAIPVIDFSK LNGEEREKTL SEIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSNPV KLLNELVQKN SGEKLENVDW EDVFTLLDHN
101: QNEWPSNIKE TMGEYREEVR KLASKMMEVM DENLGLPKGY IKKAFNEGME DGEETAFFGT KVSHYPPCPH PELVNGLRAH TDAGGVVLLF QDDEYDGLQV
201: LKDGEWIDVQ PLPNAIVINT GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAVAEE EGSEKKYPKF VFGDYMDVYA NQKFMPKEPR
301: FLAVKSL

Arabidopsis Description

1-aminocyclopropane-1-carboxylate oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPW4]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.