CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64615	Soybean	cytosol	95.44	95.13
VIT_18s0001g01840.t01	Wine grape	cytosol	77.2	81.16
CDX88361	Canola	cytosol	20.2	76.54
CDY72562	Canola	cytosol	56.35	73.93
CDY38352	Canola	cytosol	73.29	73.05
AT1G77330.1	Thale cress	cytoskeleton, cytosol, peroxisome	72.96	72.96
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	72.96	72.96
Bra008302.1-P	Field mustard	cytosol	67.43	72.89
CDX88360	Canola	cytosol	22.48	72.63
Solyc06g060070.2.1	Tomato	cytosol	74.27	72.61
PGSC0003DMT400030740	Potato	cytosol	73.94	72.52
CDX88362	Canola	cytoskeleton, cytosol, peroxisome	66.45	71.83
Bra003687.1-P	Field mustard	cytosol	71.01	71.48
GSMUA_Achr6P12910_001	Banana	cytosol	71.01	70.78
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	71.99	69.94
PGSC0003DMT400015435	Potato	cytoskeleton, cytosol, peroxisome	72.64	69.91
GSMUA_AchrUn_...	Banana	cytosol	60.59	68.38
Bra015675.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	68.08	67.64
GSMUA_AchrUn_...	Banana	cytosol	59.93	67.4
HORVU1Hr1G020450.1	Barley	cytosol	66.45	66.23
TraesCS1B01G117400.1	Wheat	cytosol	66.12	65.91
TraesCS1D01G098000.1	Wheat	cytosol	66.12	65.91
TraesCS1A01G089500.1	Wheat	cytosol	65.8	65.58
Zm00001d024852_P001	Maize	cytosol	67.1	65.4
TraesCS1A01G089600.1	Wheat	cytosol	65.47	65.26
TraesCS1B01G117500.1	Wheat	cytosol	65.47	65.26
Zm00001d024851_P001	Maize	cytosol	66.78	65.08
Zm00001d024850_P001	Maize	cytosol	66.78	65.08
TraesCS1D01G098100.1	Wheat	cytosol	65.15	64.94
HORVU1Hr1G020410.2	Barley	cytosol	65.47	64.84
GSMUA_AchrUn_...	Banana	cytosol	32.57	64.52
Zm00001d024843_P001	Maize	cytosol	65.47	64.01
GSMUA_Achr10P...	Banana	cytosol	69.06	63.66
EES17716	Sorghum	cytosol	65.47	63.61
Os05t0149400-01	Rice	plasma membrane	63.52	63.31
Os11t0186900-01	Rice	cytosol	63.52	63.11
EES19027	Sorghum	cytosol	64.82	62.97
Zm00001d004718_P001	Maize	cytosol	63.52	62.9
Zm00001d004719_P001	Maize	cytosol	63.52	62.9
GSMUA_AchrUn_...	Banana	cytosol	31.6	62.58
KRH73354	Soybean	cytosol	40.07	62.44
TraesCSU01G067700.1	Wheat	cytosol	64.17	62.34
TraesCS4D01G095500.1	Wheat	cytosol	64.17	62.34
TraesCS4A01G221300.1	Wheat	cytosol	63.52	62.3
EES09442	Sorghum	cytosol	64.17	62.15
Zm00001d000163_P001	Maize	extracellular	63.19	61.98
HORVU4Hr1G017660.1	Barley	cytosol	63.19	61.39
EES08130	Sorghum	cytosol	63.19	61.39
Os05t0149300-00	Rice	cytosol, peroxisome	34.85	57.53
Zm00001d024853_P001	Maize	plastid	65.8	56.74
KRH73352	Soybean	cytosol	53.75	53.75
KRH14788	Soybean	cytosol	52.44	52.44
KRH14791	Soybean	cytosol	52.44	52.44
HORVU1Hr1G020430.1	Barley	peroxisome	52.77	52.26
KRH73345	Soybean	nucleus	53.42	52.06
KRH14794	Soybean	nucleus	53.42	52.06
KRH36520	Soybean	cytosol	53.75	51.89
KRH14787	Soybean	cytosol	51.79	51.79
KRH41775	Soybean	cytosol	52.12	51.61
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	53.42	51.57
KRH11502	Soybean	cytosol	53.09	51.26
KRH02009	Soybean	cytosol	53.09	51.1
KRH41426	Soybean	cytosol	47.88	47.88
KRH60136	Soybean	endoplasmic reticulum	47.56	47.56
KRH49052	Soybean	cytosol	46.91	47.06
KRH73355	Soybean	cytosol	12.05	39.78
GSMUA_AchrUn_...	Banana	cytosol	61.24	32.7

Protein Annotations

EntrezGene:100790622	MapMan:11.5.1.2	Gene3D:2.60.120.330	EMBL:ACUP02003458	EMBL:BT099381	UniProt:C6TNQ1
ncoils:Coil	InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_06G117200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EnsemblPlants:KRH53298
ProteinID:KRH53298	ProteinID:KRH53298.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF189	SUPFAM:SSF51197	UniParc:UPI000189D2B1	:	:

Description

hypothetical protein

Coordinates

chr6:+:9537207..9539303

Molecular Weight (calculated)

34887.6 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.511

Length

307 amino acids

Sequence
(BLAST)

001: MAVPVIDFSK LNGEERTKTM AQIANGCEEW GFFQLINHGI PEELLERVKK VASEFYKLER EENFKNSTSV KLLSDSVEKK SSEMEHVDWE DVITLLDDNE
101: WPEKTPGFRE TMAEYRAELK KLAEKLMEVM DENLGLTKGY IKKALNGGDG ENAFFGTKVS HYPPCPHPEL VKGLRAHTDA GGVILLFQDD KVGGLQMLKE
201: GQWIDVQPLP NAIVINTGDQ IEVLSNGRYK SCWHRVLATP DGNRRSIASF YNPSFKATIC PAPQLVEKED QQVDETYPKF VFGDYMSVYA EQKFLPKEPR
301: FQAVRAM

Best Arabidopsis Sequence Match ( AT1G77330.1 )
(BLAST)

001: MAIPVIDFSK LNGEEREKTL SEIARACEEW GFFQLVNHGI PLELLNKVKK LSSDCYKTER EEAFKTSNPV KLLNELVQKN SGEKLENVDW EDVFTLLDHN
101: QNEWPSNIKE TMGEYREEVR KLASKMMEVM DENLGLPKGY IKKAFNEGME DGEETAFFGT KVSHYPPCPH PELVNGLRAH TDAGGVVLLF QDDEYDGLQV
201: LKDGEWIDVQ PLPNAIVINT GDQIEVLSNG RYKSAWHRVL AREEGNRRSI ASFYNPSYKA AIGPAAVAEE EGSEKKYPKF VFGDYMDVYA NQKFMPKEPR
301: FLAVKSL

Arabidopsis Description

1-aminocyclopropane-1-carboxylate oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPW4]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.