CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62380.1	CDY42827	AT2G42580.1	19000166
AT1G62380.1	CDY51514	AT2G42580.1	19000166
AT1G62380.1	CDY55390	AT2G42580.1	19000166
AT1G62380.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32039	Canola	cytosol	96.88	96.88
CDY12944	Canola	cytosol	93.75	93.75
CDY19546	Canola	cytosol	93.75	93.75
AT1G62380.1	Thale cress	cytosol	89.06	89.06
CDY66260	Canola	cytosol	85.62	85.36
CDY34603	Canola	cytosol	85.0	84.74
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	71.88	72.33
Solyc07g049530.2.1	Tomato	nucleus	70.94	72.06
KRH02009	Soybean	cytosol	71.56	71.79
Solyc07g049550.2.1	Tomato	nucleus	70.62	71.52
PGSC0003DMT400036081	Potato	cytosol	70.62	71.52
Solyc12g005940.1.1	Tomato	cytosol	70.31	71.2
KRH36520	Soybean	cytosol	70.31	70.75
KRH11502	Soybean	cytosol	70.0	70.44
PGSC0003DMT400055332	Potato	cytosol	69.69	69.91
Solyc02g081190.2.1	Tomato	cytosol	69.38	69.38
Solyc02g036350.2.1	Tomato	extracellular	69.06	69.28
PGSC0003DMT400043087	Potato	cytosol	69.06	69.06
CDY53397	Canola	cytosol	69.06	68.85
CDY18281	Canola	cytosol	69.06	68.85
CDX88360	Canola	cytosol	16.56	55.79
CDX88361	Canola	cytosol	12.81	50.62
CDY38352	Canola	cytosol	47.81	49.68
CDY40884	Canola	cytoskeleton, cytosol, peroxisome	47.19	49.19
CDX87524	Canola	cytoskeleton, cytosol, peroxisome	47.81	48.42
CDX88362	Canola	cytoskeleton, cytosol, peroxisome	42.5	47.89
CDY58326	Canola	cytoskeleton, cytosol, peroxisome	46.25	47.74
CDX81937	Canola	cytosol	46.25	47.74
CDY70340	Canola	cytosol	45.0	47.68
CDY21655	Canola	cytosol	45.94	47.42
CDY72562	Canola	cytosol	34.06	46.58
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.94	38.08
CDX68962	Canola	cytosol	11.88	37.25
Zm00001d044978_P001	Maize	extracellular	5.62	14.63

Protein Annotations

MapMan:11.5.1.2	Gene3D:2.60.120.330	GO:A0A078F6H4	UniProt:A0A078F6H4	EnsemblPlants:CDY08654	ProteinID:CDY08654
ProteinID:CDY08654.1	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00000484001	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF193	SUPFAM:SSF51197	UniParc:UPI0004EE3393	:	:

Description

BnaC04g19630DBnaC04g19630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6H4]

Coordinates

chrLK031987:+:540727..542633

Molecular Weight (calculated)

36406.4 Da

IEP (calculated)

4.877

GRAVY (calculated)

-0.537

Length

320 amino acids

Sequence
(BLAST)

001: MEQTIKFPVV NLSKLNGEER DQTMALINDA CENWGFFEIV NHGLPYDLMD NVEKMTKEHY KKTMEQKFND MLKSKGLEKL ETEVEDVDWE STFYLRHLPQ
101: SNLYDIPDMS DEYRTAMKDF GKRLENLAEN LLDQLCENLG LEKGYLKKMF HGTKGPSFGT KVSNYPPCPK PEMIKGLRAH TDAGGIILLF QDDKVSGLQL
201: LKDGDWIDVP PLNHSIVINL GDQLEVITNG KYKSVMHRVV TQKEGNRMSI ASFYNPGSDA EISPASSLAS KETEYPSFVF DDYMKLYAGV KFQPKEPRFE
301: AMRNATAVTE LNPAASVETF

Best Arabidopsis Sequence Match ( AT1G62380.1 )
(BLAST)

001: MEKNMKFPVV DLSKLNGEER DQTMALINEA CENWGFFEIV NHGLPHDLMD KIEKMTKDHY KTCQEQKFND MLKSKGLDNL ETEVEDVDWE STFYVRHLPQ
101: SNLNDISDVS DEYRTAMKDF GKRLENLAED LLDLLCENLG LEKGYLKKVF HGTKGPTFGT KVSNYPPCPK PEMIKGLRAH TDAGGIILLF QDDKVSGLQL
201: LKDGDWIDVP PLNHSIVINL GDQLEVITNG KYKSVLHRVV TQQEGNRMSV ASFYNPGSDA EISPATSLVE KDSEYPSFVF DDYMKLYAGV KFQPKEPRFA
301: AMKNASAVTE LNPTAAVETF

Arabidopsis Description

ACO21-aminocyclopropane-1-carboxylate oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q41931]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.