Factsheet for VIT_03s0063g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50269	Soybean	mitochondrion	70.88	69.73
KRH71148	Soybean	cytosol	65.93	64.86
Solyc01g108190.2.1	Tomato	plastid	63.74	62.7
PGSC0003DMT400066610	Potato	plastid	62.64	61.62
CDY66855	Canola	plastid	60.44	58.2
Bra039845.1-P	Field mustard	plastid	59.89	57.67
CDY37233	Canola	plastid	59.89	57.67
AT2G15680.1	Thale cress	plastid	57.14	55.62
HORVU5Hr1G068490.1	Barley	cytosol	24.73	52.33
EER96860	Sorghum	cytosol, mitochondrion	45.05	44.57
TraesCS5A01G238900.1	Wheat	mitochondrion	43.96	43.72
TraesCS5D01G246000.1	Wheat	mitochondrion	43.96	43.72
TraesCS5B01G237500.1	Wheat	mitochondrion	43.96	43.72
GSMUA_Achr9P27060_001	Banana	plastid	46.7	43.15
Os09t0458700-01	Rice	cytosol, mitochondrion	43.41	42.7
VIT_14s0006g01400.t01	Wine grape	cytosol	32.97	40.0
Zm00001d020722_P001	Maize	cytosol, mitochondrion	40.11	39.67
VIT_15s0048g00790.t01	Wine grape	mitochondrion	39.01	34.8
VIT_07s0141g00300.t01	Wine grape	cytosol	28.02	33.12
VIT_07s0289g00040.t01	Wine grape	cytosol	28.02	33.12
VIT_05s0102g00450.t01	Wine grape	endoplasmic reticulum, golgi	32.42	27.57
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	33.52	27.48
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	26.37	25.0
VIT_11s0016g05740.t01	Wine grape	extracellular, golgi	31.87	22.66

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100257203	wikigene:100257203	MapMan:35.1	EMBL:AM460282	ProteinID:CAN70198
ProteinID:CAN70198.1	ProteinID:CCB56874	ProteinID:CCB56874.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
UniProt:F6HQB7	EMBL:FN596006	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002048	EntrezGene:LOC100257203
wikigene:LOC100257203	PFAM:PF13499	PRINTS:PR00450	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF620	SMART:SM00054	SUPFAM:SSF47473	TIGR:TC53547	UniParc:UPI00015C8CEC	ArrayExpress:VIT_03s0063g00530
EnsemblPlantsGene:VIT_03s0063g00530	EnsemblPlants:VIT_03s0063g00530.t01	unigene:Vvi.3717	RefSeq:XP_002285223	RefSeq:XP_002285223.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:4054253..4055040

Molecular Weight (calculated)

20861.8 Da

IEP (calculated)

5.202

GRAVY (calculated)

-0.611

Length

182 amino acids

Sequence
(BLAST)

001: MSTPSFLDFQ YNISKRKYLR KPSRLFSSRD RQNSDLPPIF HLNMDELKKV FDKFDSNKDG KISEEEYKAV LGALVKEGVR TEVEKIFQVA DLDGDGFIDF
101: KEFVEVHKKG GGVKTRDIQS AFRAFDLNRD GKINAEELLE VLGRLGERCS LEECRRMVRG VDTDGDGAVD IDEFTTMMTR SM

Best Arabidopsis Sequence Match ( AT2G15680.1 )
(BLAST)

001: MSNVSFLELQ YKLSKNKMLR KPSRMFSRDR QSSGLSSPGP GGFSQPSVNE MRRVFSRFDL DKDGKISQTE YKVVLRALGQ ERAIEDVPKI FKAVDLDGDG
101: FIDFREFIDA YKRSGGIRSS DIRNSFWTFD LNGDGKISAE EVMSVLWKLG ERCSLEDCNR MVRAVDADGD GLVNMEEFIK MMSSNNV

Arabidopsis Description

CML30CML30 [Source:UniProtKB/TrEMBL;Acc:A0A178VPG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.