Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G101640.1 | Barley | cytosol, plastid | 92.05 | 91.45 |
| HORVU4Hr1G081250.1 | Barley | cytosol | 36.42 | 90.16 |
| HORVU6Hr1G076690.1 | Barley | cytosol | 87.42 | 88.0 |
| HORVU0Hr1G031990.1 | Barley | cytosol, plastid | 87.42 | 83.54 |
| HORVU1Hr1G023720.1 | Barley | cytosol, plastid | 86.09 | 81.25 |
| HORVU1Hr1G074240.1 | Barley | cytosol, plastid | 72.85 | 73.33 |
| HORVU7Hr1G029640.1 | Barley | cytosol, plastid | 74.17 | 71.34 |
| HORVU6Hr1G034200.1 | Barley | cytosol, plastid | 74.83 | 71.07 |
| HORVU4Hr1G032570.1 | Barley | cytosol, plastid | 70.2 | 70.67 |
| HORVU5Hr1G117570.1 | Barley | cytosol | 57.62 | 66.92 |
| HORVU4Hr1G085560.1 | Barley | cytosol, plastid | 76.82 | 65.54 |
| HORVU5Hr1G077930.1 | Barley | cytosol | 62.25 | 63.09 |
| HORVU3Hr1G007420.1 | Barley | cytosol | 70.86 | 57.53 |
| TraesCS3D01G041500.1 | Wheat | cytosol | 69.54 | 56.76 |
| TraesCS3A01G038300.1 | Wheat | cytosol | 69.54 | 56.45 |
| TraesCS3B01G045500.1 | Wheat | cytosol | 69.54 | 56.15 |
| Os01t0135700-01 | Rice | plasma membrane | 58.28 | 48.62 |
| HORVU5Hr1G073590.1 | Barley | cytosol, plastid | 54.97 | 45.6 |
| TraesCS3D01G041400.1 | Wheat | cytosol, plastid | 68.87 | 43.7 |
| Zm00001d039944_P001 | Maize | cytosol, plastid | 54.3 | 42.05 |
| EES00360 | Sorghum | cytosol | 56.29 | 41.26 |
| Zm00001d008573_P001 | Maize | plastid | 54.97 | 40.49 |
| PGSC0003DMT400014742 | Potato | cytosol | 36.42 | 33.54 |
| Solyc06g068960.1.1 | Tomato | endoplasmic reticulum, unclear | 33.77 | 33.12 |
| PGSC0003DMT400074098 | Potato | cytosol | 33.11 | 32.47 |
| Solyc03g118810.1.1 | Tomato | cytosol | 35.1 | 32.32 |
| KRH24162 | Soybean | cytosol | 27.15 | 29.29 |
| HORVU1Hr1G057410.1 | Barley | mitochondrion | 35.1 | 28.04 |
| KRH15405 | Soybean | cytosol | 26.49 | 27.78 |
| CDY70127 | Canola | cytosol | 30.46 | 27.54 |
| Bra025924.1-P | Field mustard | cytosol | 30.46 | 27.54 |
| Bra015979.1-P | Field mustard | cytosol | 28.48 | 27.04 |
| CDX96488 | Canola | cytosol | 28.48 | 27.04 |
| CDX72996 | Canola | cytosol | 28.48 | 27.04 |
| AT1G73630.1 | Thale cress | cytosol | 29.14 | 26.99 |
| KRH48613 | Soybean | cytosol | 31.13 | 26.26 |
| HORVU3Hr1G107090.2 | Barley | cytosol, plastid | 33.11 | 26.18 |
| KRH41828 | Soybean | cytosol | 31.13 | 26.11 |
| AT1G18210.1 | Thale cress | cytosol | 29.14 | 25.88 |
| CDY19196 | Canola | cytosol | 29.8 | 25.42 |
| CDX83860 | Canola | cytosol | 28.48 | 24.29 |
| KRH02767 | Soybean | cytosol | 23.84 | 23.68 |
| CDX96729 | Canola | cytosol | 27.15 | 23.56 |
| Bra016564.1-P | Field mustard | cytosol | 26.49 | 22.99 |
| HORVU1Hr1G029850.1 | Barley | cytosol | 33.11 | 21.93 |
| KRH60530 | Soybean | plastid | 30.46 | 21.3 |
| HORVU5Hr1G068490.1 | Barley | cytosol | 11.92 | 20.93 |
| HORVU5Hr1G085800.2 | Barley | cytosol | 23.18 | 20.0 |
| KRH16247 | Soybean | cytosol | 16.56 | 19.08 |
| HORVU7Hr1G008910.2 | Barley | cytosol | 24.5 | 17.29 |
| HORVU5Hr1G043460.1 | Barley | plastid | 20.53 | 16.94 |
| HORVU4Hr1G050990.1 | Barley | plastid | 21.19 | 16.58 |
| HORVU7Hr1G027770.3 | Barley | endoplasmic reticulum | 23.84 | 15.72 |
| HORVU7Hr1G072770.1 | Barley | plastid | 19.21 | 14.65 |
| HORVU3Hr1G106950.3 | Barley | cytosol | 19.21 | 10.74 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G018360.1 | EnsemblPlantsGene:HORVU5Hr1G018360 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF676 |
| PFAM:PF13202 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000B471088 | UniProt:A0A287QIE3 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr5H:+:74428047..74428581
Molecular Weight (calculated)
16108.8 Da
IEP (calculated)
6.113
GRAVY (calculated)
-0.466
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: STTTCRSSSS PPPLRSPPMK KVFSRFETDG DGRISPSELA AVSRAIAPPA TDSAGGREVA SMMDELDTDR DGYVDLGEFA AFHSHGRGER ELDAELRDAF
101: DVYDINGDGR ISHAELSKIV SRIGEGLLVL GVLASRAHTR RCASSGCGGR R
101: DVYDINGDGR ISHAELSKIV SRIGEGLLVL GVLASRAHTR RCASSGCGGR R
001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
Arabidopsis Description
CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.