CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72438
CDY28332
CDY49385
CDY51944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12830.1	CDX72438	AT4G33920.1	21798944
AT3G12830.1	CDY28332	AT4G33920.1	21798944
AT3G12830.1	CDY49385	AT4G33920.1	21798944
AT3G12830.1	CDY51944	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43398	Canola	mitochondrion	53.72	97.74
AT3G12830.1	Thale cress	mitochondrion	47.11	86.36
CDX82573	Canola	mitochondrion	43.8	84.13
CDY52877	Canola	mitochondrion	45.87	84.09
CDY69352	Canola	mitochondrion	43.39	83.33
CDY08400	Canola	mitochondrion	45.04	82.58
VIT_19s0085g00010.t01	Wine grape	mitochondrion	33.47	61.83
Solyc07g066560.1.1	Tomato	mitochondrion	31.41	60.32
PGSC0003DMT400057238	Potato	mitochondrion	31.41	58.91
KRH13714	Soybean	mitochondrion	32.23	56.12
KRH43739	Soybean	mitochondrion	31.41	55.07
CDY51000	Canola	mitochondrion	30.99	51.37
CDX81766	Canola	mitochondrion	30.17	49.66
CDX87405	Canola	mitochondrion	29.34	49.31
TraesCS4A01G297100.1	Wheat	mitochondrion, plastid	19.42	45.63
Zm00001d033464_P001	Maize	mitochondrion	19.01	44.66
GSMUA_Achr6P20050_001	Banana	cytosol, mitochondrion	22.31	44.26
TraesCS6D01G130600.1	Wheat	mitochondrion	19.83	44.04
TraesCS6A01G141200.1	Wheat	mitochondrion	21.49	43.33
HORVU4Hr1G002600.1	Barley	mitochondrion, nucleus	19.01	42.99
TraesCS4A01G297200.1	Wheat	mitochondrion	18.18	42.72
TraesCS4D01G014900.1	Wheat	mitochondrion	18.18	42.72
TraesCS4B01G016500.1	Wheat	mitochondrion, plastid	19.01	42.59
Zm00001d031146_P001	Maize	mitochondrion	19.42	42.34
GSMUA_Achr9P30660_001	Banana	mitochondrion	23.55	42.22
KXG37892	Sorghum	cytosol, mitochondrion	19.42	41.59
EES17445	Sorghum	mitochondrion	19.83	41.03
OQU84433	Sorghum	mitochondrion, peroxisome	20.66	40.65
TraesCS7A01G468900.1	Wheat	mitochondrion	22.31	40.6
TraesCS7B01G370500.1	Wheat	mitochondrion	23.14	40.29
TraesCS7B01G370200.1	Wheat	mitochondrion	23.14	40.29
TraesCS7B01G370300.1	Wheat	mitochondrion	23.14	40.29
TraesCS6B01G169500.1	Wheat	mitochondrion	19.42	40.17
Zm00001d053815_P001	Maize	mitochondrion	20.66	39.68
TraesCS7D01G456400.1	Wheat	mitochondrion	22.73	39.57
TraesCS7A01G468600.1	Wheat	mitochondrion	22.73	39.57
TraesCS7D01G456500.1	Wheat	mitochondrion	22.73	39.57
Os12t0626200-01	Rice	mitochondrion	21.07	39.23
TraesCS7D01G456300.1	Wheat	mitochondrion	21.49	39.1
Zm00001d015354_P001	Maize	mitochondrion	20.25	38.89
TraesCS7B01G370100.1	Wheat	mitochondrion	22.31	38.85
TraesCS7B01G370400.1	Wheat	mitochondrion	22.31	38.85
TraesCS7D01G456100.1	Wheat	mitochondrion	22.31	38.57
Zm00001d046986_P001	Maize	mitochondrion	21.9	38.13
TraesCS7A01G468700.1	Wheat	mitochondrion	17.77	37.72
Zm00001d036623_P001	Maize	mitochondrion	20.66	37.31
TraesCS3B01G493600.1	Wheat	mitochondrion	14.46	36.84
OQU76860	Sorghum	mitochondrion	21.07	36.69
HORVU6Hr1G027640.1	Barley	plastid	23.14	36.13
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	20.66	35.97
Os06t0671150-00	Rice	mitochondrion	20.66	35.71
EES12863	Sorghum	mitochondrion	18.18	35.48
TraesCS2D01G415500.1	Wheat	mitochondrion	16.12	33.33
TraesCS7A01G468500.1	Wheat	plastid	24.79	33.33
Zm00001d026308_P001	Maize	mitochondrion	16.94	33.06
TraesCS2B01G437000.1	Wheat	mitochondrion	14.05	31.48
TraesCS7B01G370600.1	Wheat	plastid	23.14	30.6
GSMUA_Achr6P31530_001	Banana	plastid	19.83	30.57
GSMUA_Achr4P31990_001	Banana	cytosol	20.25	30.25
TraesCS7D01G456200.1	Wheat	nucleus	25.62	29.25
Os04t0617050-01	Rice	cytosol, extracellular, mitochondrion	16.53	28.78
Zm00001d010775_P001	Maize	cytosol	9.5	28.05
HORVU7Hr1G107340.1	Barley	mitochondrion	24.38	27.83
HORVU2Hr1G098310.1	Barley	cytosol	12.4	22.56
Zm00001d010776_P001	Maize	cytosol	9.09	17.74

Protein Annotations

EnsemblPlants:CDY24242	EnsemblPlantsGene:GSBRNA2T00026368001	GO:A0A078GGF5	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF37	PFAM:PF02519	ProteinID:CDY24242	ProteinID:CDY24242.1
UniParc:UPI0004EF2989	UniProt:A0A078GGF5	MapMan:35.1	:	:	:

Description

BnaC01g38220DBnaC01g38220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGF5]

Coordinates

chrLK032155:+:548617..553811

Molecular Weight (calculated)

27538.4 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.090

Length

242 amino acids

Sequence
(BLAST)

001: MKRKMGACIY RNQILCFLGI SSEIPRDIPR ILFSVGMSVR IPMFSCSDND KGWEFGYPFG FGSGLFGFQV FEVKDFSPIQ LLIHSFSTSL ITLQNTSPLS
101: LYLSNQSSKM KYLIRRLSRV ADSAHYNLLR SDSQRPSRRP ESFLRSSMAR RSKKHTSCVP QGYVPVYVGE EMERFVVSAE LLNHPVFIGL LNRSAQEYGY
201: EQKGVLQIPC HVLVFERVIE SLRLGSTVPS DLQDLIGDET IF

Best Arabidopsis Sequence Match ( AT3G12830.1 )
(BLAST)

001: MKQLIRRLSR VADSAQYSLL RSDSQRPSRR SESFLRSSVT RRSKKQTSSV PEGHVPVYVG DEMERFVVSA ELLNHPVFIG LLNRSAQEYG YEQKGVLQIP
101: CHVLVFERIM ESLRLGLPVP IDVQDLIGDG TI

Arabidopsis Description

SAUR72Auxin-responsive protein SAUR72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.