Factsheet for Os04t0617050-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0758000-01
Os03t0207400-01
Os06t0219500-00
Os12t0580900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56150.1	Os02t0758000-01	AT4G25200.1	21798944
AT1G56150.1	Os06t0219500-00	AT4G25200.1	21798944
AT1G79130.1	Os03t0207400-01	AT4G33920.1	21798944
AT1G79130.1	Os12t0580900-01	AT4G33920.1	21798944
AT3G12830.1	Os03t0207400-01	AT4G33920.1	21798944
AT3G12830.1	Os12t0580900-01	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G415500.1	Wheat	mitochondrion	62.59	74.36
Zm00001d026308_P001	Maize	mitochondrion	66.19	74.19
EES12863	Sorghum	mitochondrion	62.59	70.16
Zm00001d010775_P001	Maize	cytosol	37.41	63.41
TraesCS2B01G437000.1	Wheat	mitochondrion	48.92	62.96
Zm00001d010776_P001	Maize	cytosol	34.53	38.71
GSMUA_Achr6P20050_001	Banana	cytosol, mitochondrion	33.09	37.7
Os12t0626200-01	Rice	mitochondrion	35.25	37.69
HORVU2Hr1G098310.1	Barley	cytosol	35.97	37.59
Os06t0671150-00	Rice	mitochondrion	35.97	35.71
GSMUA_Achr9P30660_001	Banana	mitochondrion	34.53	35.56
AT1G56150.1	Thale cress	mitochondrion	28.06	35.45
Solyc07g066560.1.1	Tomato	mitochondrion	31.65	34.92
PGSC0003DMT400057238	Potato	mitochondrion	30.94	33.33
VIT_19s0085g00010.t01	Wine grape	mitochondrion	30.22	32.06
CDY69352	Canola	mitochondrion	28.78	31.75
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	31.65	31.65
Bra001473.1-P	Field mustard	mitochondrion	28.06	30.95
CDX82573	Canola	mitochondrion	28.06	30.95
AT1G79130.1	Thale cress	mitochondrion	29.5	30.6
AT3G12830.1	Thale cress	mitochondrion	28.06	29.55
KRH13714	Soybean	mitochondrion	29.5	29.5
CDX81766	Canola	mitochondrion	30.94	29.25
GSMUA_Achr4P31990_001	Banana	cytosol	33.81	29.01
Bra026044.1-P	Field mustard	mitochondrion	30.22	28.97
CDY51000	Canola	mitochondrion	30.22	28.77
Bra026717.1-P	Field mustard	mitochondrion	30.22	28.77
CDY43398	Canola	mitochondrion	27.34	28.57
Bra039345.1-P	Field mustard	mitochondrion	27.34	28.57
KRH43739	Soybean	mitochondrion	28.06	28.26
CDY08400	Canola	mitochondrion	26.62	28.03
Bra034725.1-P	Field mustard	mitochondrion	26.62	28.03
AT1G16510.1	Thale cress	mitochondrion	29.5	27.89
CDY52877	Canola	mitochondrion	25.9	27.27
GSMUA_Achr6P31530_001	Banana	plastid	30.22	26.75
Bra035094.1-P	Field mustard	mitochondrion	26.62	25.69
CDX87405	Canola	mitochondrion	26.62	25.69
CDY24242	Canola	mitochondrion	28.78	16.53

Protein Annotations

EnsemblPlants:Os04t0617050-01	EnsemblPlantsGene:Os04g0617050	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	InterPro:SAUR_fam
PANTHER:PTHR31374	PANTHER:PTHR31374:SF38	PFAM:PF02519	ProteinID:BAS91023.1	SEG:seg	UniParc:UPI000393C234
UniProt:A0A0P0WER0	MapMan:35.2	:	:	:	:

Description

SMALL AUXIN-UP RNA 21Similar to H0313F03.1 protein. (Os04t0617050-01)

Coordinates

chr4:-:31349656..31350385

Molecular Weight (calculated)

14162.3 Da

IEP (calculated)

9.837

GRAVY (calculated)

0.256

Length

139 amino acids

Sequence
(BLAST)

001: PSSLSLRDTV LSLPPPLLTM RGLMRCASTG ACRVAPGAVA ARASAAAVGG GTTKVPAGHV PVEVGAEGEE TERFVVPAEL LGRPPIAELL RRAAQEYGYA
101: RRGPIRIPCP AAAFRRLLGA LTGGSGEGGL ALSYFSVVV

Best Arabidopsis Sequence Match ( AT1G79130.1 )
(BLAST)

001: MKPLIRRLSR IADSSSCNRN RSGDIHHPTS TYSSSVFLVK RATVASSVPS GHVPVNVGED KERFVVSAEL LNHPVFVGLL NRSAQEYGYT QKGVLHIPCN
101: VFVFEQVVES LRSGIADDTS ELIASLSGED VSTE

Arabidopsis Description

SAUR40SAUR40 [Source:UniProtKB/TrEMBL;Acc:A0A178W9C0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.