CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 6
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EER95306
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56150.1	EER89430	AT4G25200.1	21798944
AT1G56150.1	EER89431	AT4G25200.1	21798944
AT1G56150.1	KXG19616	AT4G25200.1	21798944
AT1G56150.1	OQU75612	AT4G25200.1	21798944
AT1G56150.1	OQU75930	AT4G25200.1	21798944
AT1G56150.1	OQU76071	AT4G25200.1	21798944
AT1G56150.1	OQU85385	AT4G25200.1	21798944
AT1G79130.1	EER95306	AT4G33920.1	21798944
AT3G12830.1	EER95306	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026308_P001	Maize	mitochondrion	86.29	86.29
TraesCS2B01G437000.1	Wheat	mitochondrion	61.29	70.37
TraesCS2D01G415500.1	Wheat	mitochondrion	66.13	70.09
Zm00001d010775_P001	Maize	cytosol	45.16	68.29
Os04t0617050-01	Rice	cytosol, extracellular, mitochondrion	70.16	62.59
OQU84433	Sorghum	mitochondrion, peroxisome	45.16	45.53
KXG37892	Sorghum	cytosol, mitochondrion	41.13	45.13
EES17445	Sorghum	mitochondrion	41.13	43.59
OQU76860	Sorghum	mitochondrion	47.58	42.45
Zm00001d010776_P001	Maize	cytosol	39.52	39.52
GSMUA_Achr6P20050_001	Banana	cytosol, mitochondrion	38.71	39.34
AT1G56150.1	Thale cress	mitochondrion	34.68	39.09
HORVU2Hr1G098310.1	Barley	cytosol	41.13	38.35
GSMUA_Achr9P30660_001	Banana	mitochondrion	41.13	37.78
Bra001473.1-P	Field mustard	mitochondrion	37.9	37.3
CDX82573	Canola	mitochondrion	37.9	37.3
CDY69352	Canola	mitochondrion	37.1	36.51
Solyc07g066560.1.1	Tomato	mitochondrion	36.29	35.71
PGSC0003DMT400057238	Potato	mitochondrion	36.29	34.88
AT3G12830.1	Thale cress	mitochondrion	36.29	34.09
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	37.9	33.81
CDY43398	Canola	mitochondrion	35.48	33.08
Bra039345.1-P	Field mustard	mitochondrion	35.48	33.08
KRH13714	Soybean	mitochondrion	36.29	32.37
AT1G79130.1	Thale cress	mitochondrion	34.68	32.09
AT1G16510.1	Thale cress	mitochondrion	37.9	31.97
KRH43739	Soybean	mitochondrion	35.48	31.88
CDY51000	Canola	mitochondrion	37.1	31.51
VIT_19s0085g00010.t01	Wine grape	mitochondrion	33.06	31.3
Bra034725.1-P	Field mustard	mitochondrion	33.06	31.06
CDY52877	Canola	mitochondrion	33.06	31.06
CDY08400	Canola	mitochondrion	33.06	31.06
Bra026717.1-P	Field mustard	mitochondrion	36.29	30.82
CDX81766	Canola	mitochondrion	36.29	30.61
Bra035094.1-P	Field mustard	mitochondrion	34.68	29.86
CDX87405	Canola	mitochondrion	34.68	29.86
Bra026044.1-P	Field mustard	mitochondrion	33.87	28.97
GSMUA_Achr6P31530_001	Banana	plastid	35.48	28.03
GSMUA_Achr4P31990_001	Banana	cytosol	35.48	27.16
CDY24242	Canola	mitochondrion	35.48	18.18

Protein Annotations

EnsemblPlants:EES12863	EnsemblPlantsGene:SORBI_3006G216400	EntrezGene:8074707	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF38	PFAM:PF02519	ProteinID:EES12863	ProteinID:EES12863.1
RefSeq:XP_002448535.1	SEG:seg	unigene:Sbi.11085	UniParc:UPI0001A87627	UniProt:C5YG27	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:-:56426208..56427169

Molecular Weight (calculated)

12690.6 Da

IEP (calculated)

9.364

GRAVY (calculated)

0.227

Length

124 amino acids

Sequence
(BLAST)

001: MTMRGLLRCV STGACRVAPG AVAEPVPTSP GSTGGKVPAG HVPVEVGAEG EETQRFVVPA ELLGRPPIAE LLRRAAQEYG YARRGPLRIP CPVAAFRRLL
101: GALAGTGAGA PDGALTLAYF TVVV

Best Arabidopsis Sequence Match ( AT1G79130.1 )
(BLAST)

001: MKPLIRRLSR IADSSSCNRN RSGDIHHPTS TYSSSVFLVK RATVASSVPS GHVPVNVGED KERFVVSAEL LNHPVFVGLL NRSAQEYGYT QKGVLHIPCN
101: VFVFEQVVES LRSGIADDTS ELIASLSGED VSTE

Arabidopsis Description

SAUR40SAUR40 [Source:UniProtKB/TrEMBL;Acc:A0A178W9C0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.