CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72438
CDY28332
CDY49385
CDY51944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79130.1	CDX72438	AT4G33920.1	21798944
AT1G79130.1	CDY28332	AT4G33920.1	21798944
AT1G79130.1	CDY49385	AT4G33920.1	21798944
AT1G79130.1	CDY51944	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035094.1-P	Field mustard	mitochondrion	95.83	95.83
AT1G79130.1	Thale cress	mitochondrion	50.69	54.48
CDX82573	Canola	mitochondrion	46.53	53.17
CDY43398	Canola	mitochondrion	48.61	52.63
CDY69352	Canola	mitochondrion	45.83	52.38
CDY51000	Canola	mitochondrion	51.39	50.68
VIT_19s0085g00010.t01	Wine grape	mitochondrion	45.14	49.62
CDY08400	Canola	mitochondrion	45.14	49.24
Solyc07g066560.1.1	Tomato	mitochondrion	43.06	49.21
CDX81766	Canola	mitochondrion	50.0	48.98
KRH13714	Soybean	mitochondrion	47.22	48.92
CDY52877	Canola	mitochondrion	44.44	48.48
PGSC0003DMT400057238	Potato	mitochondrion	43.06	48.06
KRH43739	Soybean	mitochondrion	44.44	46.38
GSMUA_Achr6P20050_001	Banana	cytosol, mitochondrion	36.81	43.44
Zm00001d033464_P001	Maize	mitochondrion	28.47	39.81
GSMUA_Achr9P30660_001	Banana	mitochondrion	36.81	39.26
TraesCS4D01G014900.1	Wheat	mitochondrion	27.78	38.84
TraesCS4A01G297200.1	Wheat	mitochondrion	27.78	38.84
OQU84433	Sorghum	mitochondrion, peroxisome	32.64	38.21
Zm00001d015354_P001	Maize	mitochondrion	33.33	38.1
KXG37892	Sorghum	cytosol, mitochondrion	29.86	38.05
TraesCS4A01G297100.1	Wheat	mitochondrion, plastid	27.08	37.86
HORVU4Hr1G002600.1	Barley	mitochondrion, nucleus	27.78	37.38
TraesCS4B01G016500.1	Wheat	mitochondrion, plastid	27.78	37.04
TraesCS6D01G130600.1	Wheat	mitochondrion	27.78	36.7
Zm00001d031146_P001	Maize	mitochondrion	27.78	36.04
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	34.72	35.97
TraesCS6B01G169500.1	Wheat	mitochondrion	29.17	35.9
Zm00001d036623_P001	Maize	mitochondrion	33.33	35.82
Zm00001d053815_P001	Maize	mitochondrion	30.56	34.92
EES12863	Sorghum	mitochondrion	29.86	34.68
TraesCS6A01G141200.1	Wheat	mitochondrion	28.47	34.17
TraesCS7A01G468900.1	Wheat	mitochondrion	31.25	33.83
EES17445	Sorghum	mitochondrion	27.08	33.33
TraesCS2B01G437000.1	Wheat	mitochondrion	25.0	33.33
Zm00001d010775_P001	Maize	cytosol	18.75	32.93
TraesCS2D01G415500.1	Wheat	mitochondrion	26.39	32.48
Zm00001d046986_P001	Maize	mitochondrion	31.25	32.37
TraesCS7D01G456500.1	Wheat	mitochondrion	31.25	32.37
TraesCS7D01G456400.1	Wheat	mitochondrion	31.25	32.37
TraesCS7B01G370500.1	Wheat	mitochondrion	31.25	32.37
TraesCS7B01G370300.1	Wheat	mitochondrion	31.25	32.37
TraesCS7B01G370100.1	Wheat	mitochondrion	31.25	32.37
TraesCS7B01G370200.1	Wheat	mitochondrion	31.25	32.37
TraesCS7D01G456300.1	Wheat	mitochondrion	29.86	32.33
TraesCS7B01G370400.1	Wheat	mitochondrion	30.56	31.65
TraesCS7A01G468600.1	Wheat	mitochondrion	30.56	31.65
OQU76860	Sorghum	mitochondrion	30.56	31.65
Os12t0626200-01	Rice	mitochondrion	28.47	31.54
Zm00001d026308_P001	Maize	mitochondrion	27.08	31.45
TraesCS7D01G456100.1	Wheat	mitochondrion	30.56	31.43
Os06t0671150-00	Rice	mitochondrion	30.56	31.43
TraesCS3B01G493600.1	Wheat	mitochondrion	20.14	30.53
GSMUA_Achr6P31530_001	Banana	plastid	32.64	29.94
CDY24242	Canola	mitochondrion	49.31	29.34
TraesCS7A01G468700.1	Wheat	mitochondrion	22.92	28.95
GSMUA_Achr4P31990_001	Banana	cytosol	31.94	28.4
Os04t0617050-01	Rice	cytosol, extracellular, mitochondrion	25.69	26.62
HORVU6Hr1G027640.1	Barley	plastid	28.47	26.45
TraesCS7A01G468500.1	Wheat	plastid	31.25	25.0
TraesCS7B01G370600.1	Wheat	plastid	31.25	24.59
Zm00001d010776_P001	Maize	cytosol	18.75	21.77
HORVU7Hr1G107340.1	Barley	mitochondrion	31.25	21.23
TraesCS7D01G456200.1	Wheat	nucleus	31.25	21.23
HORVU2Hr1G098310.1	Barley	cytosol	18.75	20.3

Protein Annotations

EnsemblPlants:CDX87405	EnsemblPlantsGene:GSBRNA2T00146381001	GO:A0A078DDV0	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	InterPro:SAUR_fam	PANTHER:PTHR31374
PANTHER:PTHR31374:SF37	PFAM:PF02519	ProteinID:CDX87405	ProteinID:CDX87405.1	SEG:seg	UniParc:UPI0004EF39B7
MapMan:35.1	:	:	:	:	:

Description

BnaA07g34680DAuxin-responsive protein SAUR40 [Source:Projected from Arabidopsis thaliana (AT1G79130) UniProtKB/Swiss-Prot;Acc:O64538]

Coordinates

chrLK031850:-:482337..482771

Molecular Weight (calculated)

15896.9 Da

IEP (calculated)

7.127

GRAVY (calculated)

-0.060

Length

144 amino acids

Sequence
(BLAST)

001: MKSPLRRYSQ VADSSSSHHS FCCNQIFRRD VHHPTSFLVK RATTVASSIP SGLVPVDVGE KMDRFLVSAE LLNHPVFVGL LNRSAQEYGY AQKGVLHIPC
101: NVFVFERVIE ALRSGASQSR DVPELVASLT GDEDVSLWLP GVTE

Best Arabidopsis Sequence Match ( AT1G79130.1 )
(BLAST)

001: MKPLIRRLSR IADSSSCNRN RSGDIHHPTS TYSSSVFLVK RATVASSVPS GHVPVNVGED KERFVVSAEL LNHPVFVGLL NRSAQEYGYT QKGVLHIPCN
101: VFVFEQVVES LRSGIADDTS ELIASLSGED VSTE

Arabidopsis Description

SAUR40SAUR40 [Source:UniProtKB/TrEMBL;Acc:A0A178W9C0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.