Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G016500.1 | Wheat | mitochondrion, plastid | 96.12 | 91.67 |
| TraesCS4A01G297100.1 | Wheat | mitochondrion, plastid | 89.32 | 89.32 |
| HORVU4Hr1G002600.1 | Barley | mitochondrion, nucleus | 91.26 | 87.85 |
| TraesCS4D01G014900.1 | Wheat | mitochondrion | 87.38 | 87.38 |
| Zm00001d033464_P001 | Maize | mitochondrion | 73.79 | 73.79 |
| KXG37892 | Sorghum | cytosol, mitochondrion | 70.87 | 64.6 |
| GSMUA_Achr6P20050_001 | Banana | cytosol, mitochondrion | 55.34 | 46.72 |
| TraesCS6A01G141200.1 | Wheat | mitochondrion | 53.4 | 45.83 |
| AT1G56150.1 | Thale cress | mitochondrion | 46.6 | 43.64 |
| GSMUA_Achr9P30660_001 | Banana | mitochondrion | 55.34 | 42.22 |
| TraesCS7A01G468900.1 | Wheat | mitochondrion | 54.37 | 42.11 |
| TraesCS7A01G468600.1 | Wheat | mitochondrion | 54.37 | 40.29 |
| Solyc07g066560.1.1 | Tomato | mitochondrion | 48.54 | 39.68 |
| PGSC0003DMT400057238 | Potato | mitochondrion | 48.54 | 38.76 |
| GSMUA_Achr5P00300_001 | Banana | cytosol, mitochondrion, nucleus | 51.46 | 38.13 |
| CDY69352 | Canola | mitochondrion | 45.63 | 37.3 |
| Bra001473.1-P | Field mustard | mitochondrion | 45.63 | 37.3 |
| CDX82573 | Canola | mitochondrion | 45.63 | 37.3 |
| TraesCS7A01G468700.1 | Wheat | mitochondrion | 40.78 | 36.84 |
| AT3G12830.1 | Thale cress | mitochondrion | 46.6 | 36.36 |
| VIT_19s0085g00010.t01 | Wine grape | mitochondrion | 45.63 | 35.88 |
| KRH13714 | Soybean | mitochondrion | 47.57 | 35.25 |
| CDY52877 | Canola | mitochondrion | 43.69 | 34.09 |
| CDY08400 | Canola | mitochondrion | 43.69 | 34.09 |
| Bra034725.1-P | Field mustard | mitochondrion | 43.69 | 34.09 |
| KRH43739 | Soybean | mitochondrion | 45.63 | 34.06 |
| GSMUA_Achr6P31530_001 | Banana | plastid | 50.49 | 33.12 |
| Bra039345.1-P | Field mustard | mitochondrion | 42.72 | 33.08 |
| CDY43398 | Canola | mitochondrion | 42.72 | 33.08 |
| AT1G79130.1 | Thale cress | mitochondrion | 41.75 | 32.09 |
| GSMUA_Achr4P31990_001 | Banana | cytosol | 47.57 | 30.25 |
| Bra026717.1-P | Field mustard | mitochondrion | 42.72 | 30.14 |
| CDY51000 | Canola | mitochondrion | 42.72 | 30.14 |
| TraesCS7A01G468500.1 | Wheat | plastid | 52.43 | 30.0 |
| AT1G16510.1 | Thale cress | mitochondrion | 42.72 | 29.93 |
| CDX81766 | Canola | mitochondrion | 42.72 | 29.93 |
| Bra035094.1-P | Field mustard | mitochondrion | 39.81 | 28.47 |
| Bra026044.1-P | Field mustard | mitochondrion | 39.81 | 28.28 |
| CDX87405 | Canola | mitochondrion | 38.84 | 27.78 |
| CDY24242 | Canola | mitochondrion | 42.72 | 18.18 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G297200.1 | EnsemblPlantsGene:TraesCS4A01G297200 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 | InterPro:SAUR_fam |
| PANTHER:PTHR31374 | PANTHER:PTHR31374:SF49 | PFAM:PF02519 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4A:+:596743214..596743525
Molecular Weight (calculated)
10918.1 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.379
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQLIRRLSR VGDDSSPPAS PSSKRRGGGG GGRAVVPEGH VPVHVGDGSE AERFLVRAEL LGRPALAELL GRAAQEYGYD HQGPLRIPCC SPAAFRRALA
101: DCC
101: DCC
001: MKQLIRRLSR VADSTQYSLL RSESQRGRTK KEKHKSWVPE GHVPVYVGHE MERFVVNAEL LNHPVFVALL KQSAQEYGYE QQGVLRIPCH VLVFERILES
101: LRLGLADRVT
101: LRLGLADRVT
Arabidopsis Description
SAUR71Auxin-responsive protein SAUR71 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGU2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.