CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72438
CDY28332
CDY49385
CDY51944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12830.1	CDX72438	AT4G33920.1	21798944
AT3G12830.1	CDY28332	AT4G33920.1	21798944
AT3G12830.1	CDY49385	AT4G33920.1	21798944
AT3G12830.1	CDY51944	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08400	Canola	mitochondrion	97.73	97.73
CDY43398	Canola	mitochondrion	85.61	84.96
AT3G12830.1	Thale cress	mitochondrion	81.06	81.06
CDX82573	Canola	mitochondrion	77.27	80.95
CDY69352	Canola	mitochondrion	76.52	80.16
VIT_19s0085g00010.t01	Wine grape	mitochondrion	60.61	61.07
Solyc07g066560.1.1	Tomato	mitochondrion	56.06	58.73
PGSC0003DMT400057238	Potato	mitochondrion	56.06	57.36
KRH43739	Soybean	mitochondrion	55.3	52.9
KRH13714	Soybean	mitochondrion	55.3	52.52
CDY51000	Canola	mitochondrion	55.3	50.0
CDX81766	Canola	mitochondrion	54.55	48.98
CDY24242	Canola	mitochondrion	84.09	45.87
TraesCS4A01G297100.1	Wheat	mitochondrion, plastid	35.61	45.63
GSMUA_Achr6P20050_001	Banana	cytosol, mitochondrion	41.67	45.08
Zm00001d031146_P001	Maize	mitochondrion	37.88	45.05
Zm00001d033464_P001	Maize	mitochondrion	34.85	44.66
EES17445	Sorghum	mitochondrion	39.39	44.44
CDX87405	Canola	mitochondrion	48.48	44.44
HORVU4Hr1G002600.1	Barley	mitochondrion, nucleus	35.61	43.93
TraesCS4D01G014900.1	Wheat	mitochondrion	34.09	43.69
TraesCS4A01G297200.1	Wheat	mitochondrion	34.09	43.69
TraesCS4B01G016500.1	Wheat	mitochondrion, plastid	34.85	42.59
GSMUA_Achr9P30660_001	Banana	mitochondrion	43.18	42.22
TraesCS6D01G130600.1	Wheat	mitochondrion	34.85	42.2
TraesCS6A01G141200.1	Wheat	mitochondrion	37.88	41.67
KXG37892	Sorghum	cytosol, mitochondrion	34.85	40.71
TraesCS7B01G370500.1	Wheat	mitochondrion	40.91	38.85
TraesCS6B01G169500.1	Wheat	mitochondrion	34.09	38.46
Os12t0626200-01	Rice	mitochondrion	37.88	38.46
TraesCS7A01G468900.1	Wheat	mitochondrion	38.64	38.35
OQU84433	Sorghum	mitochondrion, peroxisome	35.61	38.21
TraesCS7B01G370300.1	Wheat	mitochondrion	40.15	38.13
Zm00001d015354_P001	Maize	mitochondrion	36.36	38.1
TraesCS7A01G468600.1	Wheat	mitochondrion	39.39	37.41
TraesCS7B01G370400.1	Wheat	mitochondrion	39.39	37.41
TraesCS7D01G456400.1	Wheat	mitochondrion	39.39	37.41
TraesCS7D01G456500.1	Wheat	mitochondrion	39.39	37.41
Zm00001d053815_P001	Maize	mitochondrion	35.61	37.3
TraesCS7D01G456300.1	Wheat	mitochondrion	37.12	36.84
TraesCS7B01G370100.1	Wheat	mitochondrion	38.64	36.69
OQU76860	Sorghum	mitochondrion	38.64	36.69
TraesCS7D01G456100.1	Wheat	mitochondrion	38.64	36.43
Zm00001d046986_P001	Maize	mitochondrion	37.88	35.97
TraesCS7B01G370200.1	Wheat	mitochondrion	37.88	35.97
TraesCS7A01G468700.1	Wheat	mitochondrion	31.06	35.96
Zm00001d036623_P001	Maize	mitochondrion	36.36	35.82
TraesCS3B01G493600.1	Wheat	mitochondrion	25.76	35.79
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	36.36	34.53
Os06t0671150-00	Rice	mitochondrion	35.61	33.57
EES12863	Sorghum	mitochondrion	31.06	33.06
TraesCS2D01G415500.1	Wheat	mitochondrion	28.79	32.48
HORVU6Hr1G027640.1	Barley	plastid	37.88	32.26
Zm00001d026308_P001	Maize	mitochondrion	29.55	31.45
TraesCS7A01G468500.1	Wheat	plastid	40.91	30.0
GSMUA_Achr4P31990_001	Banana	cytosol	36.36	29.63
TraesCS2B01G437000.1	Wheat	mitochondrion	24.24	29.63
GSMUA_Achr6P31530_001	Banana	plastid	34.85	29.3
Zm00001d010775_P001	Maize	cytosol	17.42	28.05
TraesCS7B01G370600.1	Wheat	plastid	38.64	27.87
Os04t0617050-01	Rice	cytosol, extracellular, mitochondrion	27.27	25.9
HORVU7Hr1G107340.1	Barley	mitochondrion	40.15	25.0
TraesCS7D01G456200.1	Wheat	nucleus	37.88	23.58
HORVU2Hr1G098310.1	Barley	cytosol	22.73	22.56
Zm00001d010776_P001	Maize	cytosol	15.91	16.94

Protein Annotations

EnsemblPlants:CDY52877	EnsemblPlantsGene:GSBRNA2T00008037001	GO:A0A078ISB7	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF37	PFAM:PF02519	ProteinID:CDY52877	ProteinID:CDY52877.1
SEG:seg	UniParc:UPI0001BA520A	UniProt:A0A078ISB7	MapMan:35.1	:	:

Description

BnaCnng23650DBnaCnng23650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISB7]

Coordinates

chrLK033138:-:39850..40611

Molecular Weight (calculated)

15250.6 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.333

Length

132 amino acids

Sequence
(BLAST)

001: MKHLIRRLSR VADSTHYNLL RSDSQRRSRR SEFSLRSSMA RRLKKHTSSV PQGHVPVYVG EEMERFLVSA EVLNHPVFIG LLKRSAQEYG YEQKGVLQIP
101: CHVLVFERIM ESVRLGLAVP SDLQDLISEE CM

Best Arabidopsis Sequence Match ( AT3G12830.1 )
(BLAST)

001: MKQLIRRLSR VADSAQYSLL RSDSQRPSRR SESFLRSSVT RRSKKQTSSV PEGHVPVYVG DEMERFVVSA ELLNHPVFIG LLNRSAQEYG YEQKGVLQIP
101: CHVLVFERIM ESLRLGLPVP IDVQDLIGDG TI

Arabidopsis Description

SAUR72Auxin-responsive protein SAUR72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.