CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72438
CDY28332
CDY49385
CDY51944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12830.1	CDX72438	AT4G33920.1	21798944
AT3G12830.1	CDY28332	AT4G33920.1	21798944
AT3G12830.1	CDY49385	AT4G33920.1	21798944
AT3G12830.1	CDY51944	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034725.1-P	Field mustard	mitochondrion	100.0	100.0
CDY52877	Canola	mitochondrion	97.73	97.73
CDY43398	Canola	mitochondrion	84.09	83.46
CDX82573	Canola	mitochondrion	76.52	80.16
AT3G12830.1	Thale cress	mitochondrion	79.55	79.55
CDY69352	Canola	mitochondrion	75.76	79.37
VIT_19s0085g00010.t01	Wine grape	mitochondrion	61.36	61.83
Solyc07g066560.1.1	Tomato	mitochondrion	56.06	58.73
PGSC0003DMT400057238	Potato	mitochondrion	56.06	57.36
KRH43739	Soybean	mitochondrion	56.06	53.62
KRH13714	Soybean	mitochondrion	55.3	52.52
CDY51000	Canola	mitochondrion	56.06	50.68
CDX81766	Canola	mitochondrion	55.3	49.66
TraesCS4A01G297100.1	Wheat	mitochondrion, plastid	35.61	45.63
CDX87405	Canola	mitochondrion	49.24	45.14
GSMUA_Achr6P20050_001	Banana	cytosol, mitochondrion	41.67	45.08
CDY24242	Canola	mitochondrion	82.58	45.04
Zm00001d033464_P001	Maize	mitochondrion	34.85	44.66
EES17445	Sorghum	mitochondrion	39.39	44.44
Zm00001d031146_P001	Maize	mitochondrion	37.12	44.14
HORVU4Hr1G002600.1	Barley	mitochondrion, nucleus	35.61	43.93
TraesCS4D01G014900.1	Wheat	mitochondrion	34.09	43.69
TraesCS4A01G297200.1	Wheat	mitochondrion	34.09	43.69
TraesCS4B01G016500.1	Wheat	mitochondrion, plastid	34.85	42.59
GSMUA_Achr9P30660_001	Banana	mitochondrion	43.18	42.22
TraesCS6D01G130600.1	Wheat	mitochondrion	34.85	42.2
TraesCS6A01G141200.1	Wheat	mitochondrion	37.88	41.67
KXG37892	Sorghum	cytosol, mitochondrion	34.85	40.71
TraesCS7B01G370500.1	Wheat	mitochondrion	40.91	38.85
TraesCS6B01G169500.1	Wheat	mitochondrion	34.09	38.46
Os12t0626200-01	Rice	mitochondrion	37.88	38.46
TraesCS7A01G468900.1	Wheat	mitochondrion	38.64	38.35
OQU84433	Sorghum	mitochondrion, peroxisome	35.61	38.21
TraesCS7B01G370300.1	Wheat	mitochondrion	40.15	38.13
Zm00001d053815_P001	Maize	mitochondrion	36.36	38.1
Zm00001d015354_P001	Maize	mitochondrion	36.36	38.1
TraesCS7A01G468600.1	Wheat	mitochondrion	39.39	37.41
TraesCS7D01G456500.1	Wheat	mitochondrion	39.39	37.41
TraesCS7B01G370400.1	Wheat	mitochondrion	39.39	37.41
TraesCS7D01G456400.1	Wheat	mitochondrion	39.39	37.41
TraesCS7D01G456300.1	Wheat	mitochondrion	37.12	36.84
OQU76860	Sorghum	mitochondrion	38.64	36.69
TraesCS7B01G370100.1	Wheat	mitochondrion	38.64	36.69
TraesCS7D01G456100.1	Wheat	mitochondrion	38.64	36.43
Zm00001d046986_P001	Maize	mitochondrion	37.88	35.97
TraesCS7B01G370200.1	Wheat	mitochondrion	37.88	35.97
TraesCS7A01G468700.1	Wheat	mitochondrion	31.06	35.96
Zm00001d036623_P001	Maize	mitochondrion	36.36	35.82
TraesCS3B01G493600.1	Wheat	mitochondrion	25.76	35.79
GSMUA_Achr5P00300_001	Banana	cytosol, mitochondrion, nucleus	36.36	34.53
Os06t0671150-00	Rice	mitochondrion	35.61	33.57
EES12863	Sorghum	mitochondrion	31.06	33.06
TraesCS2D01G415500.1	Wheat	mitochondrion	28.79	32.48
HORVU6Hr1G027640.1	Barley	plastid	37.88	32.26
Zm00001d026308_P001	Maize	mitochondrion	29.55	31.45
TraesCS2B01G437000.1	Wheat	mitochondrion	25.0	30.56
TraesCS7A01G468500.1	Wheat	plastid	40.91	30.0
GSMUA_Achr4P31990_001	Banana	cytosol	36.36	29.63
GSMUA_Achr6P31530_001	Banana	plastid	34.85	29.3
TraesCS7B01G370600.1	Wheat	plastid	38.64	27.87
Zm00001d010775_P001	Maize	cytosol	16.67	26.83
Os04t0617050-01	Rice	cytosol, extracellular, mitochondrion	28.03	26.62
HORVU7Hr1G107340.1	Barley	mitochondrion	40.15	25.0
TraesCS7D01G456200.1	Wheat	nucleus	37.88	23.58
HORVU2Hr1G098310.1	Barley	cytosol	22.73	22.56
Zm00001d010776_P001	Maize	cytosol	15.91	16.94

Protein Annotations

EnsemblPlants:CDY08400	EnsemblPlantsGene:GSBRNA2T00000154001	GO:A0A078F1R1	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF37	PFAM:PF02519	ProteinID:CDY08400	ProteinID:CDY08400.1
SEG:seg	UniParc:UPI0002548184	UniProt:A0A078F1R1	MapMan:35.1	:	:

Description

BnaA05g26360DBnaA05g26360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1R1]

Coordinates

chrLK031986:+:37520..38283

Molecular Weight (calculated)

15203.5 Da

IEP (calculated)

10.313

GRAVY (calculated)

-0.320

Length

132 amino acids

Sequence
(BLAST)

001: MKHLIRRLSR VADSTHYNLL RSDSQRRSRR SKFSLRSSMA RRLKKHTSSV PQGHVPVYVG EEMERFLVSA EVLNHPVFIG LLKRSAQEYG YEQKGVLQIP
101: CHVLVFERIM ESVRLGLAVP SDLQDLVSEE CV

Best Arabidopsis Sequence Match ( AT1G16510.1 )
(BLAST)

001: MKHLIRRLSR VADSSSEFSI RRSTSSFRNR RGHHRLHAPP PPWSICPARR VNTVPAGHVP VYVGEEMERF VVSAELMNHP IFVGLLNRSA QEYGYAQKGV
101: LHIPCHVIVF ERVVETLRLG GFEGSGDLEN LVASLLSGDE LIPETTE

Arabidopsis Description

SAUR41Auxin-responsive protein SAUR41 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA49]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.