CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46529	Canola	extracellular, vacuole	97.63	66.34
CDY47849	Canola	extracellular, vacuole	96.45	65.65
CDY34422	Canola	endoplasmic reticulum, extracellular, vacuole	95.97	65.32
Solyc12g055970.1.1	Tomato	cytosol, nucleus	68.96	62.99
PGSC0003DMT400012809	Potato	extracellular, vacuole	69.91	54.63
KRH41305	Soybean	nucleus	76.07	51.36
KRH60035	Soybean	nucleus	75.59	51.12
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	73.46	49.28
CDX90780	Canola	endoplasmic reticulum, extracellular	72.99	49.2
Solyc08g082250.2.1	Tomato	extracellular	71.8	48.48
CDY05130	Canola	extracellular, vacuole	71.8	48.4
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	71.56	48.32
GSMUA_Achr4P08520_001	Banana	endoplasmic reticulum, extracellular, vacuole	63.51	45.81
KXG31545	Sorghum	cytosol	50.47	39.15
EES19222	Sorghum	vacuole	54.74	36.84
HORVU3Hr1G029470.2	Barley	endoplasmic reticulum, extracellular, vacuole	54.03	36.6
Zm00001d010446_P001	Maize	vacuole	54.03	36.6
Os01t0220100-01	Rice	extracellular, vacuole	55.45	36.56
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	53.32	36.23
TraesCS1D01G397400.1	Wheat	extracellular, vacuole	53.08	36.13
CDY01915	Canola	cytosol	30.81	35.81
HORVU1Hr1G085830.2	Barley	vacuole	52.84	35.74
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	53.32	35.71
TraesCS4B01G104500.1	Wheat	extracellular, vacuole	52.37	35.65
Os05t0212300-01	Rice	extracellular, vacuole	53.08	35.61
CDY59895	Canola	cytosol, vacuole	42.42	35.31
Os01t0219600-00	Rice	mitochondrion	53.32	35.16
TraesCS3D01G153400.1	Wheat	extracellular, mitochondrion, plastid, vacuole	53.08	34.3
Zm00001d008952_P001	Maize	extracellular	52.37	34.26
EES00050	Sorghum	extracellular, mitochondrion, plastid, vacuole	52.13	33.64
CDY17123	Canola	vacuole	37.68	30.46
CDY19428	Canola	vacuole	37.2	30.08
CDY19174	Canola	vacuole	37.2	29.79
CDY23776	Canola	vacuole	36.97	29.66
CDY60075	Canola	vacuole	43.36	29.23
CDY65179	Canola	extracellular	43.36	29.23
CDX93707	Canola	vacuole	42.89	29.01
CDX83426	Canola	extracellular, plastid, vacuole	29.86	26.3
CDX94202	Canola	vacuole	29.86	26.25
CDY10945	Canola	extracellular, vacuole	29.86	26.25
CDY44116	Canola	extracellular	29.62	26.04
CDX74666	Canola	vacuole	30.09	25.97
CDY10895	Canola	extracellular	29.38	25.83
CDY04737	Canola	extracellular, vacuole	30.09	25.81
CDY21424	Canola	extracellular	30.09	25.71
CDY52780	Canola	extracellular, vacuole	31.52	25.68
CDY12503	Canola	extracellular, vacuole	29.38	25.67
CDX68334	Canola	endoplasmic reticulum	29.62	25.61
CDY23486	Canola	extracellular	29.62	25.61
CDX97262	Canola	vacuole	31.04	25.49
CDY22043	Canola	extracellular, vacuole	31.28	25.48
CDX96271	Canola	extracellular, vacuole	30.09	25.45
CDY11552	Canola	endoplasmic reticulum, extracellular	30.09	25.45
CDY37936	Canola	extracellular	27.49	25.44
CDY32480	Canola	extracellular, vacuole	30.81	25.39
CDY47675	Canola	vacuole	29.38	25.36
CDY37459	Canola	endoplasmic reticulum, extracellular	30.57	25.29
CDY25758	Canola	extracellular, vacuole	28.91	25.26
CDY66787	Canola	extracellular, plastid, vacuole	28.91	25.21
CDX96319	Canola	extracellular, plastid, vacuole	28.91	25.21
CDX74668	Canola	extracellular	29.38	25.15
CDX95605	Canola	extracellular, vacuole	29.62	25.05
CDY47674	Canola	extracellular, vacuole	29.15	24.95
CDX74664	Canola	extracellular, vacuole	28.44	24.54
CDX87948	Canola	extracellular, vacuole	28.2	24.49
CDY12319	Canola	cytosol, extracellular, vacuole	28.2	24.49
CDY42599	Canola	cytosol	27.25	24.21
CDY22399	Canola	extracellular	28.2	24.19
CDY03686	Canola	extracellular	27.49	24.02
CDY30943	Canola	golgi, vacuole	27.49	23.87
CDY21221	Canola	golgi, vacuole	27.49	23.87
CDY41955	Canola	extracellular, vacuole	27.73	23.64
CDX72723	Canola	extracellular	27.49	23.58
CDY41954	Canola	vacuole	26.07	23.55
CDY03687	Canola	extracellular	26.78	23.35
CDY42597	Canola	extracellular	25.36	22.91
CDX74667	Canola	extracellular, vacuole	23.46	22.86
CDY22400	Canola	extracellular, vacuole	25.12	22.8
CDY37939	Canola	extracellular, vacuole	26.07	22.77
CDY60076	Canola	extracellular	3.08	5.37

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:A0A078F9B9
UniProt:A0A078F9B9	InterPro:CBM_49	EnsemblPlants:CDY08373	ProteinID:CDY08373	ProteinID:CDY08373.1	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00000101001	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS
InterPro:IPR012341	PFAM:PF00759	PFAM:PF09478	ScanProsite:PS00592	ScanProsite:PS00698	PANTHER:PTHR22298
PANTHER:PTHR22298:SF19	MetaCyc:PWY-6788	SMART:SM01063	SUPFAM:SSF48208	UniParc:UPI0004EE8B37	SEG:seg

Description

BnaC09g12230DEndoglucanase [Source:UniProtKB/TrEMBL;Acc:A0A078F9B9]

Coordinates

chrLK031985:+:674028..680199

Molecular Weight (calculated)

46961.9 Da

IEP (calculated)

10.249

GRAVY (calculated)

-0.278

Length

422 amino acids

Sequence
(BLAST)

001: MFCNLTYNLL QFRGKYDSSI TVASKYYGSV SGYNDELLWA ASWLYQASNN QFYLDYLGRN GDSMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHT
101: AVFQKFQQKA DFFMCSLLGK GSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSYLRCSAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
201: GYGNNFPQRV HHRGSSIVSY KVDRSFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQLLP
301: VVPAPVVVRR PMPIRKPRVT SPVRASGPVA IVQKMTGSWV SKGRTYYRYS TTVTNKSPRA LKSLNLSIKN LYGPIWGLSR SVNSFGLPSW MHSLQSGKSL
401: EFVYIHSTTP ANVAVSRYTL CV

Best Arabidopsis Sequence Match ( AT1G48930.1 )
(BLAST)

001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN

Arabidopsis Description

AtGH9C1Endoglucanase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M995]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.