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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, vacuole

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, vacuole
Any Predictor:cytosol, nucleus, vacuole
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:vacuole
PProwler:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93707 Canola vacuole 96.25 78.21
CDY60075 Canola vacuole 91.12 73.8
CDY65179 Canola extracellular 91.12 73.8
AT1G48930.1 Thale cress vacuole 89.55 72.41
VIT_01s0011g02170.t01 Wine grape endoplasmic reticulum, extracellular 67.65 55.77
PGSC0003DMT400051238 Potato extracellular 67.65 54.27
KRH24186 Soybean extracellular, vacuole 67.26 54.21
KRH29156 Soybean extracellular, vacuole 66.67 53.91
Solyc02g014220.2.1 Tomato extracellular 66.86 53.64
GSMUA_Achr2P03770_001 Banana vacuole 57.2 47.62
CDY60076 Canola extracellular 22.68 47.52
EES13091 Sorghum vacuole 55.23 44.44
Os04t0674800-01 Rice extracellular 54.44 44.16
Zm00001d026605_P001 Maize vacuole 54.04 43.84
TraesCS2D01G557500.1 Wheat extracellular 52.66 43.27
HORVU2Hr1G120100.1 Barley extracellular 52.47 43.18
TraesCS2B01G586600.1 Wheat extracellular 51.87 42.83
CDY08373 Canola cytosol, extracellular, mitochondrion, nucleus 35.31 42.42
CDY17123 Canola vacuole 43.0 41.76
CDY19428 Canola vacuole 43.0 41.76
TraesCS2A01G556300.1 Wheat vacuole 52.86 41.55
CDY23776 Canola vacuole 42.6 41.06
CDY05130 Canola extracellular, vacuole 50.69 41.05
CDX90780 Canola endoplasmic reticulum, extracellular 50.69 41.05
CDY19174 Canola vacuole 41.81 40.23
CDY47675 Canola vacuole 38.66 40.08
CDX74666 Canola vacuole 38.66 40.08
CDY47674 Canola extracellular, vacuole 38.66 39.76
CDX74668 Canola extracellular 38.66 39.76
CDX83426 Canola extracellular, plastid, vacuole 37.28 39.46
CDY34422 Canola endoplasmic reticulum, extracellular, vacuole 48.13 39.35
CDY47849 Canola extracellular, vacuole 47.93 39.19
CDY46529 Canola extracellular, vacuole 47.93 39.13
CDX74664 Canola extracellular, vacuole 37.48 38.85
CDX74667 Canola extracellular, vacuole 32.74 38.34
CDX95605 Canola extracellular, vacuole 37.67 38.28
CDY01915 Canola cytosol 26.23 36.64
CDY44116 Canola extracellular 33.73 35.62
CDY10945 Canola extracellular, vacuole 33.73 35.62
CDX94202 Canola vacuole 33.53 35.42
CDY10895 Canola extracellular 33.33 35.21
CDY22399 Canola extracellular 33.73 34.76
CDY25758 Canola extracellular, vacuole 32.94 34.58
CDY03686 Canola extracellular 32.74 34.37
CDY12503 Canola extracellular, vacuole 32.74 34.37
CDX72723 Canola extracellular 33.14 34.15
CDY42599 Canola cytosol 31.76 33.89
CDX96319 Canola extracellular, plastid, vacuole 32.35 33.88
CDY66787 Canola extracellular, plastid, vacuole 31.95 33.47
CDY23486 Canola extracellular 32.15 33.4
CDX68334 Canola endoplasmic reticulum 32.15 33.4
CDY37936 Canola extracellular 29.98 33.33
CDY41954 Canola vacuole 30.57 33.19
CDY22043 Canola extracellular, vacuole 33.73 33.01
CDX87948 Canola extracellular, vacuole 31.56 32.92
CDY12319 Canola cytosol, extracellular, vacuole 31.56 32.92
CDY37939 Canola extracellular, vacuole 31.36 32.92
CDY52780 Canola extracellular, vacuole 33.53 32.82
CDY41955 Canola extracellular, vacuole 31.95 32.73
CDY04737 Canola extracellular, vacuole 31.76 32.72
CDX97262 Canola vacuole 33.14 32.68
CDY11552 Canola endoplasmic reticulum, extracellular 32.15 32.67
CDX96271 Canola extracellular, vacuole 32.15 32.67
CDY03687 Canola extracellular 31.16 32.64
CDY32480 Canola extracellular, vacuole 32.74 32.42
CDY21424 Canola extracellular 31.56 32.39
CDY22400 Canola extracellular, vacuole 29.59 32.26
CDY42597 Canola extracellular 29.59 32.12
CDY21221 Canola golgi, vacuole 30.77 32.1
CDY30943 Canola golgi, vacuole 30.77 32.1
CDY37459 Canola endoplasmic reticulum, extracellular 32.15 31.96
Protein Annotations
KEGG:00500+3.2.1.4Gene3D:1.50.10.10MapMan:35.1InterPro:6-hairpin_glycosidase_sfInterPro:6hp_glycosidase-like_sfGO:A0A078J8S0
UniProt:A0A078J8S0InterPro:CBM_49EnsemblPlants:CDY59895ProteinID:CDY59895ProteinID:CDY59895.1GO:GO:0000272
GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0005488GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0008810GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0016798
GO:GO:0030245GO:GO:0030246EnsemblPlantsGene:GSBRNA2T00027872001InterPro:Glyco_hydro_9InterPro:Glyco_hydro_9_His_ASInterPro:IPR012341
PFAM:PF00759PFAM:PF09478ScanProsite:PS00592PANTHER:PTHR22298PANTHER:PTHR22298:SF41MetaCyc:PWY-6788
SMART:SM01063SUPFAM:SSF48208UniParc:UPI0004EEB234SEG:seg::
Description
BnaC06g40900DEndoglucanase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078J8S0]
Coordinates
chrLK033818:-:43746..46009
Molecular Weight (calculated)
56607.5 Da
IEP (calculated)
9.252
GRAVY (calculated)
-0.461
Length
507 amino acids
Sequence
(BLAST)
001: TLWSIRWVTD YFIKAHPQPN VLWGQVGDGQ SDHYCWQRAE DMTTSRTAYK LDQYHPGSDL AGETAAAFAA PSLAFKPYNS SYSTILLSHA KELFSFADKY
101: RGLYTDSIPN AKAFYMSSGY SDELLWAVAW LHRATGDQYY LKYTIDNAGY MGGTGWGMKE FSWDNKYAGV QVLLSKVLLE GKGGPYTSTL KQYQMKADYF
201: ACACLKKNGG YNIQTTPGGL MYVREWNNLQ YSSAAAFLLA VYSDHLSAAN AKLNCPDGSV QPQALLDFAR SQADYILGKN RQGMSYLVGY GPKYPIRVHH
301: RGASVPSIFV QRSSVSCVQG FDSWYRRSQA DPNVIYGALV GGPDQNDNYS DDRTNYEQSE PTLSGTAPLV GLFAKLSVGS YGGGYSKPYQ TTKQQATSYK
401: ATPTTYTPKQ SGAPIEFLHS ITANWMAGNT RYYRHKVIIK NSSQKQISDL KLKIEDLSGP IWGLIPTGQK NTYQLPRWQK ILRAEQTHDF VYVQGGPQAK
501: VSVLSYY
Best Arabidopsis Sequence Match ( AT1G48930.1 )
(BLAST)
001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN
Arabidopsis Description
AtGH9C1Endoglucanase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M995]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.