Factsheet for Os04t0674800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 7
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G557500.1	Wheat	extracellular	76.16	77.15
Zm00001d026605_P001	Maize	vacuole	76.8	76.8
EES13091	Sorghum	vacuole	76.96	76.35
TraesCS2B01G586600.1	Wheat	extracellular	74.56	75.9
HORVU2Hr1G120100.1	Barley	extracellular	74.4	75.49
TraesCS2A01G556300.1	Wheat	vacuole	74.88	72.56
GSMUA_Achr2P03770_001	Banana	vacuole	61.76	63.38
CDY60076	Canola	extracellular	22.72	58.68
VIT_01s0011g02170.t01	Wine grape	endoplasmic reticulum, extracellular	56.64	57.56
KRH24186	Soybean	extracellular, vacuole	57.44	57.07
Bra032270.1-P	Field mustard	extracellular	54.72	56.16
KRH29156	Soybean	extracellular, vacuole	56.16	55.98
Solyc02g014220.2.1	Tomato	extracellular	56.32	55.7
PGSC0003DMT400051238	Potato	extracellular	56.32	55.7
Bra018765.1-P	Field mustard	vacuole	55.04	55.13
CDX93707	Canola	vacuole	54.88	54.97
CDY60075	Canola	vacuole	55.04	54.95
CDY65179	Canola	extracellular	55.04	54.95
CDY59895	Canola	cytosol, vacuole	44.16	54.44
AT1G48930.1	Thale cress	vacuole	54.4	54.23
Os08t0425300-00	Rice	extracellular	43.36	51.23
Os09t0394300-01	Rice	extracellular, vacuole	35.84	50.79
Os02t0151300-01	Rice	endoplasmic reticulum, extracellular, vacuole	43.2	50.56
Os02t0738600-01	Rice	mitochondrion	42.4	47.92
Os02t0123700-01	Rice	extracellular	38.56	47.91
Os05t0129200-00	Rice	endoplasmic reticulum, extracellular, vacuole	38.24	46.68
Os06t0247900-01	Rice	cytosol	33.76	46.17
Os01t0312800-01	Rice	extracellular	36.8	46.09
Os04t0443300-00	Rice	vacuole	36.64	45.8
Os05t0212300-01	Rice	extracellular, vacuole	46.08	45.79
Os06t0256900-01	Rice	endoplasmic reticulum, extracellular, vacuole	35.68	44.87
Os09t0530200-01	Rice	mitochondrion	36.64	44.47
Os08t0114200-01	Rice	plastid	36.96	44.17
Os01t0220100-01	Rice	extracellular, vacuole	45.12	44.06
Os01t0219600-00	Rice	mitochondrion	45.12	44.06
Os02t0778600-01	Rice	plasma membrane	35.04	43.71
Os02t0733300-01	Rice	extracellular	35.04	43.11
Os08t0387400-01	Rice	extracellular	34.88	42.25

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	EntrezGene:4337384	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
EMBL:AK119913	ProteinID:BAF16157.1	ProteinID:BAS91608.1	ProteinID:CAE03241.2	InterPro:CBM_49	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0016798	GO:GO:0030245	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS
InterPro:IPR012341	EnsemblPlantsGene:Os04g0674800	EnsemblPlants:Os04t0674800-01	PFAM:PF00759	PFAM:PF09478	ScanProsite:PS00698
PANTHER:PTHR22298	PANTHER:PTHR22298:SF41	UniProt:Q0J930	SMART:SM01063	SUPFAM:SSF48208	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00001B14D8	RefSeq:XP_015634039.1	SEG:seg	:	:

Description

glycoside hydrolase OsGH9C1Similar to CEL1=CELLULASE 1 (Fragment). (Os04t0674800-01)

Coordinates

chr4:-:34450562..34454341

Molecular Weight (calculated)

68457.4 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.235

Length

625 amino acids

Sequence
(BLAST)

001: MAATMNKTPA TTFLLIPAAA SLVLLLAAAA SVEASAFDYA GAFDKCLLFF EAQRSGKLPD DRLVRWRGDS ALTDGFSQGV DLVGGYYDSG DHVKFGLPMA
101: YAVTMLSWGV VEFEKEMVDG NKLHRVLDAI RWGTNYFVKA HTQHNALWVQ VGDGDSDHLC WERAEDMSTP RTAFKIDINN PGSEVAGETA AALAAAAKAF
201: KPYDRMYSDL LLLHSKQLFT FADTFRGKYD DSLQSAKKFY PSASGYQDEL LWAAAWLYEA TGDEQYLRYV SQNAEAFGGT GWAVTEFSWD NKYAGLQVLL
301: SKVLFEQGGS AAGYADTLKQ YQAKAEFFLC ACLQKNNGHN VKMTPGGLMY VSDWSNMQYV SSSAFLLTVY ADYLAESRGT LRCPDGEVKP AEILRFARSQ
401: VDYVLGKNPK GMSYMVGYGS YYPTHVHHRG ASIPSIYAMN ATVGCMESFD KYYNSKNADP NVLHGALVGG PDANDAYDDD RCNYQHAEPT LAGNAPMSGV
501: FARLAASPAD NTPEYTPAPN APSPSNGGSP LEFVHTVTNT WKANGVDYYR HVVTAKNTCG HAITYLKLQI KELSGEIYGV SRTNAKDMYE FPSWMTRLDA
601: GAQLTIVYIQ GGPAAKIAVV EYKTA

Best Arabidopsis Sequence Match ( AT1G48930.1 )
(BLAST)

001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN

Arabidopsis Description

AtGH9C1Endoglucanase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M995]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.