Factsheet for VIT_01s0011g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051238	Potato	extracellular	73.98	71.99
KRH24186	Soybean	extracellular, vacuole	72.85	71.22
KRH29156	Soybean	extracellular, vacuole	72.52	71.13
Solyc02g014220.2.1	Tomato	extracellular	73.01	71.04
Bra032270.1-P	Field mustard	extracellular	67.8	68.47
CDY60076	Canola	extracellular	26.83	68.18
CDY59895	Canola	cytosol, vacuole	55.77	67.65
Bra018765.1-P	Field mustard	vacuole	68.62	67.63
CDX93707	Canola	vacuole	68.46	67.47
AT1G48930.1	Thale cress	vacuole	68.78	67.46
CDY60075	Canola	vacuole	68.29	67.09
CDY65179	Canola	extracellular	68.29	67.09
GSMUA_Achr2P03770_001	Banana	vacuole	62.44	63.05
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	48.62	57.39
Zm00001d026605_P001	Maize	vacuole	58.05	57.12
VIT_19s0090g01050.t01	Wine grape	extracellular, vacuole	47.32	57.06
EES13091	Sorghum	vacuole	58.05	56.67
Os04t0674800-01	Rice	extracellular	57.56	56.64
TraesCS2D01G557500.1	Wheat	extracellular	55.77	55.59
HORVU2Hr1G120100.1	Barley	extracellular	55.28	55.19
VIT_13s0067g01200.t01	Wine grape	extracellular, vacuole	42.76	54.79
TraesCS2B01G586600.1	Wheat	extracellular	54.47	54.56
TraesCS2A01G556300.1	Wheat	vacuole	55.77	53.18
VIT_13s0067g01190.t01	Wine grape	extracellular, vacuole	41.63	53.0
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	50.89	49.76
VIT_02s0025g02650.t01	Wine grape	endoplasmic reticulum, extracellular	36.91	46.04
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	37.56	45.92
VIT_04s0008g02010.t01	Wine grape	vacuole	36.42	45.81
VIT_04s0008g02020.t01	Wine grape	vacuole	36.1	45.68
VIT_07s0005g00740.t01	Wine grape	plastid	37.07	44.62
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	34.96	43.52
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	34.15	42.42
VIT_16s0022g00750.t01	Wine grape	extracellular, vacuole	32.85	40.48

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100267914	wikigene:100267914	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf
InterPro:6hp_glycosidase-like_sf	ProteinID:CBI27137	ProteinID:CBI27137.3	InterPro:CBM_49	UniProt:D7T9G6	EMBL:FN595752
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:IPR012341	EntrezGene:LOC100267914
wikigene:LOC100267914	PFAM:PF00759	PFAM:PF09478	PANTHER:PTHR22298	PANTHER:PTHR22298:SF41	SMART:SM01063
SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001BE2BE2	ArrayExpress:VIT_01s0011g02170	EnsemblPlantsGene:VIT_01s0011g02170
EnsemblPlants:VIT_01s0011g02170.t01	RefSeq:XP_002277177	RefSeq:XP_002277177.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:1887669..1890871

Molecular Weight (calculated)

67998.2 Da

IEP (calculated)

6.693

GRAVY (calculated)

-0.268

Length

615 amino acids

Sequence
(BLAST)

001: MERSFTHCLV LAIFLGLFAL EATAGASFNY GDAMEKSLMF FEAQRSGKLP VNQRVKWRGD SGLRDGLLQG VDLVGGYYDA GDHVKFGLPM AFTVTMLSWG
101: AIDYRKEITG LNQMGDTLAA IKWGTDYFIK AHTEPDVLWG QVGDGDSDHY CWERAEDMTT PRNAYKLDPN HPGSDLAGET AAAMAAASMA FKLYNSSYSS
201: LLLAHGKQLF SFADRFRGQY DDSIQCARQY YTSSGYSDEL LWAAAWLFRA TGDEYYLKYV VDNAVSMGGT GWAVKEFSWD NKYAGVQILL SKVLMEGRGG
301: AYASTLKKYQ AKADFFACAC LQKNDGYNVP LTPGGLVYLH EWNNMQYASS AAFLLAVYSD YLSAENAVLK CPDAQVQPYE LLNFAKSQAD YILGKNPKSM
401: SYLVGYGQKY PVHAHHRGSS IASVAVLHST VGCVEGFESW YHRPEANPNV IYGGLVGGPD KNDGFSDDRS NYEQTEPTLS GGAPLVGLFS KLQSLIGTSG
501: SHSQKSPAPH HQNTPIIYAD VPVEFIHFIT NTWTIGRTTY YRHKVIIKNK SQKPITDLKL AIENLSGTLW GLNPCQEKNT YELPQWMKVL QPGSQSSFVY
601: VQGGPQAKVS VLSYH

Best Arabidopsis Sequence Match ( AT1G48930.1 )
(BLAST)

001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN

Arabidopsis Description

AtGH9C1Endoglucanase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M995]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.