Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- vacuole 4
- extracellular 5
- plasma membrane 4
- golgi 3
- endoplasmic reticulum 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g055970.1.1 | Tomato | cytosol, nucleus | 77.96 | 91.13 |
| PGSC0003DMT400032028 | Potato | endoplasmic reticulum, extracellular, vacuole | 81.67 | 70.56 |
| CDY08373 | Canola | cytosol, extracellular, mitochondrion, nucleus | 54.63 | 69.91 |
| KRH41305 | Soybean | nucleus | 77.04 | 66.56 |
| KRH60035 | Soybean | nucleus | 76.48 | 66.19 |
| VIT_02s0025g01380.t01 | Wine grape | extracellular, vacuole | 76.48 | 65.66 |
| CDY34422 | Canola | endoplasmic reticulum, extracellular, vacuole | 72.78 | 63.39 |
| CDY47849 | Canola | extracellular, vacuole | 72.59 | 63.23 |
| CDY46529 | Canola | extracellular, vacuole | 72.59 | 63.12 |
| Bra027699.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 72.41 | 62.96 |
| Bra027735.1-P | Field mustard | extracellular, vacuole | 72.22 | 62.9 |
| CDX90780 | Canola | endoplasmic reticulum, extracellular | 72.78 | 62.78 |
| AT4G11050.1 | Thale cress | vacuole | 72.41 | 62.46 |
| CDY05130 | Canola | extracellular, vacuole | 72.22 | 62.3 |
| GSMUA_Achr4P08520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 66.48 | 61.37 |
| TraesCS4B01G104500.1 | Wheat | extracellular, vacuole | 61.48 | 53.55 |
| TraesCS1D01G397400.1 | Wheat | extracellular, vacuole | 61.48 | 53.55 |
| TraesCS1A01G389300.1 | Wheat | extracellular, vacuole | 61.48 | 53.46 |
| Os05t0212300-01 | Rice | extracellular, vacuole | 62.04 | 53.26 |
| EES19222 | Sorghum | vacuole | 61.11 | 52.63 |
| Zm00001d010446_P001 | Maize | vacuole | 60.56 | 52.49 |
| HORVU1Hr1G085830.2 | Barley | vacuole | 60.19 | 52.08 |
| HORVU3Hr1G029470.2 | Barley | endoplasmic reticulum, extracellular, vacuole | 59.07 | 51.2 |
| Os01t0220100-01 | Rice | extracellular, vacuole | 60.56 | 51.09 |
| Zm00001d008952_P001 | Maize | extracellular | 60.56 | 50.7 |
| TraesCS3A01G144600.1 | Wheat | extracellular, vacuole | 58.7 | 50.32 |
| EES00050 | Sorghum | extracellular, mitochondrion, plastid, vacuole | 60.93 | 50.31 |
| Os01t0219600-00 | Rice | mitochondrion | 58.7 | 49.53 |
| TraesCS3D01G153400.1 | Wheat | extracellular, mitochondrion, plastid, vacuole | 58.7 | 48.55 |
| PGSC0003DMT400069884 | Potato | extracellular, vacuole | 42.22 | 47.6 |
| KXG31545 | Sorghum | cytosol | 46.48 | 46.14 |
| PGSC0003DMT400001781 | Potato | extracellular, vacuole | 42.96 | 46.12 |
| PGSC0003DMT400057164 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.52 | 42.69 |
| PGSC0003DMT400072087 | Potato | golgi, vacuole | 33.52 | 42.09 |
| PGSC0003DMT400081314 | Potato | extracellular | 38.7 | 41.8 |
| PGSC0003DMT400051238 | Potato | extracellular | 47.96 | 40.98 |
| PGSC0003DMT400052749 | Potato | extracellular, vacuole | 35.93 | 39.92 |
| PGSC0003DMT400023082 | Potato | extracellular, vacuole | 36.11 | 39.88 |
| PGSC0003DMT400031897 | Potato | endoplasmic reticulum, extracellular | 35.56 | 38.55 |
| PGSC0003DMT400008105 | Potato | endoplasmic reticulum, extracellular, vacuole | 35.19 | 38.38 |
| PGSC0003DMT400031762 | Potato | extracellular | 34.63 | 37.25 |
| PGSC0003DMT400021687 | Potato | vacuole | 33.15 | 37.14 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | InterPro:CBM_49 |
| GO:GO:0000272 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008810 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0030245 | GO:GO:0030246 | InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_Asp/Glu_AS | InterPro:Glyco_hydro_9_His_AS |
| InterPro:IPR012341 | UniProt:M1A1U4 | PFAM:PF00759 | PFAM:PF09478 | EnsemblPlantsGene:PGSC0003DMG400004992 | PGSC:PGSC0003DMG400004992 |
| EnsemblPlants:PGSC0003DMT400012809 | ScanProsite:PS00592 | ScanProsite:PS00698 | PANTHER:PTHR22298 | PANTHER:PTHR22298:SF19 | SMART:SM01063 |
| SUPFAM:SSF48208 | UniParc:UPI000295B790 | SEG:seg | : | : | : |
Description
Endo-beta-1,4-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400004992]
Coordinates
chr12:-:53665949..53670485
Molecular Weight (calculated)
59703.1 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.350
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTLFLLFPN LAFGSHNYGE ALSKSFLFYE AQRSGYLPHD QRVQWRGNSG LNDGKASGVD LVGGYYDAGD NVKFGLPMAF TVTMMSWSII EYGKQMSESG
101: ELSNAIDAIK WGADYLLKAH PEPHVLYGEL FEFADKYRGK YDSSITVAQK YYRSVSGYAD ELLWAAAWLY KASNKQYYLN YLGENGDALG GTGWSMTEFG
201: WDVKYAGVQT LAAKFLMQGN AGNHAAVFEK YQEKAENFMC ACLGKGNQNI HKSPGGLIFR QRWNNMQFVT SASFLATVYS DYLASAGKSL KCASGPVSPP
301: ELLDFAKSQV DYLLGDNPRA TSYMVGYGNN YPRQVHHRGS SIVSVKVDPT FVSCRGGYAT WFNRKANDPN LLTGAIVGGP DAYDNFADQR DNYEQTEPAT
401: YNNAPLIGVL ARLHGGQSEY SQLLPVAIPQ PKPDPEQKVT PAPATDIAIE QKETTSWVRE GKTYYRYSAI VTNKSSKTLK NLKLSVSQLY GSLWGLSKYG
501: DSYVFPAWIN SLPAGKSLEF VYIHTANSPA VVSVSNYTLD
101: ELSNAIDAIK WGADYLLKAH PEPHVLYGEL FEFADKYRGK YDSSITVAQK YYRSVSGYAD ELLWAAAWLY KASNKQYYLN YLGENGDALG GTGWSMTEFG
201: WDVKYAGVQT LAAKFLMQGN AGNHAAVFEK YQEKAENFMC ACLGKGNQNI HKSPGGLIFR QRWNNMQFVT SASFLATVYS DYLASAGKSL KCASGPVSPP
301: ELLDFAKSQV DYLLGDNPRA TSYMVGYGNN YPRQVHHRGS SIVSVKVDPT FVSCRGGYAT WFNRKANDPN LLTGAIVGGP DAYDNFADQR DNYEQTEPAT
401: YNNAPLIGVL ARLHGGQSEY SQLLPVAIPQ PKPDPEQKVT PAPATDIAIE QKETTSWVRE GKTYYRYSAI VTNKSSKTLK NLKLSVSQLY GSLWGLSKYG
501: DSYVFPAWIN SLPAGKSLEF VYIHTANSPA VVSVSNYTLD
001: MGSRTTISIL VVLLLGLVQL AISGHDYKQA LSKSILFFEA QRSGHLPPNQ RVSWRSHSGL YDGKSSGVDL VGGYYDAGDN VKFGLPMAFT VTTMCWSIIE
101: YGGQLESNGE LGHAIDAVKW GTDYFIKAHP EPNVLYGEVG DGKSDHYCWQ RPEEMTTDRR AYKIDRNNPG SDLAGETAAA MAAASIVFRR SDPSYSAELL
201: RHAHQLFEFA DKYRGKYDSS ITVAQKYYRS VSGYNDELLW AAAWLYQATN DKYYLDYLGK NGDSMGGTGW SMTEFGWDVK YAGVQTLVAK VLMQGKGGEH
301: TAVFERYQQK AEQFMCSLLG KSTKNIKKTP GGLIFRQSWN NMQFVTSASF LATVYSDYLS YSKRDLLCSQ GNISPSQLLE FSKSQVDYIL GDNPRATSYM
401: VGYGENYPRQ VHHRGSSIVS FNVDQKFVTC RGGYATWFSR KGSDPNVLTG ALVGGPDAYD NFADQRDNYE QTEPATYNNA PLLGVLARLI SGSTGFDQLL
501: PGVSPTPSPV IIKPAPVPQR KPTKPPASSP SPITISQKMT NSWKNEGKVY YRYSTILTNR STKTLKILKI SITKLYGPIW GVTKTGNSFS FPSWMQSLPS
601: GKSMEFVYIH SASPADVLVS NYSLE
101: YGGQLESNGE LGHAIDAVKW GTDYFIKAHP EPNVLYGEVG DGKSDHYCWQ RPEEMTTDRR AYKIDRNNPG SDLAGETAAA MAAASIVFRR SDPSYSAELL
201: RHAHQLFEFA DKYRGKYDSS ITVAQKYYRS VSGYNDELLW AAAWLYQATN DKYYLDYLGK NGDSMGGTGW SMTEFGWDVK YAGVQTLVAK VLMQGKGGEH
301: TAVFERYQQK AEQFMCSLLG KSTKNIKKTP GGLIFRQSWN NMQFVTSASF LATVYSDYLS YSKRDLLCSQ GNISPSQLLE FSKSQVDYIL GDNPRATSYM
401: VGYGENYPRQ VHHRGSSIVS FNVDQKFVTC RGGYATWFSR KGSDPNVLTG ALVGGPDAYD NFADQRDNYE QTEPATYNNA PLLGVLARLI SGSTGFDQLL
501: PGVSPTPSPV IIKPAPVPQR KPTKPPASSP SPITISQKMT NSWKNEGKVY YRYSTILTNR STKTLKILKI SITKLYGPIW GVTKTGNSFS FPSWMQSLPS
601: GKSMEFVYIH SASPADVLVS NYSLE
Arabidopsis Description
AtGH9C3Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.