Factsheet for PGSC0003DMT400031897

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083210.2.1	Tomato	extracellular, vacuole	95.78	95.98
VIT_02s0025g02650.t01	Wine grape	endoplasmic reticulum, extracellular	79.92	80.73
KRG97785	Soybean	extracellular	74.3	73.41
GSMUA_Achr1P08170_001	Banana	endoplasmic reticulum, extracellular, vacuole	64.06	71.21
HORVU7Hr1G075970.1	Barley	endoplasmic reticulum, extracellular, vacuole	65.26	65.66
TraesCS7A01G317700.1	Wheat	extracellular	64.46	64.98
TraesCS7D01G314400.1	Wheat	vacuole	64.46	64.98
TraesCS7B01G219100.1	Wheat	extracellular	64.26	64.78
HORVU5Hr1G052830.1	Barley	endoplasmic reticulum, extracellular	64.06	64.19
TraesCS5B01G169500.1	Wheat	unclear	64.06	63.93
TraesCS5A01G172100.1	Wheat	extracellular, vacuole	64.06	63.93
Os02t0123700-01	Rice	extracellular	64.26	63.62
TraesCS5B01G169600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	63.45	63.58
TraesCS5D01G176800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	63.65	63.53
PGSC0003DMT400081314	Potato	extracellular	62.65	62.4
Os08t0114200-01	Rice	plastid	64.26	61.19
TraesCS5A01G172200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	64.06	60.19
EES13257	Sorghum	extracellular	59.84	59.36
EES04405	Sorghum	plasma membrane, vacuole	61.04	59.14
Zm00001d015067_P001	Maize	plasma membrane, vacuole	61.04	58.13
PGSC0003DMT400021687	Potato	vacuole	55.62	57.47
Zm00001d035082_P001	Maize	extracellular	57.23	56.89
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	55.42	55.76
PGSC0003DMT400023082	Potato	extracellular, vacuole	53.21	54.19
PGSC0003DMT400031762	Potato	extracellular	50.8	50.4
PGSC0003DMT400069884	Potato	extracellular, vacuole	46.99	48.85
PGSC0003DMT400072087	Potato	golgi, vacuole	41.97	48.6
PGSC0003DMT400001781	Potato	extracellular, vacuole	47.79	47.32
PGSC0003DMT400052749	Potato	extracellular, vacuole	45.78	46.91
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.55	42.92
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	46.99	37.44
PGSC0003DMT400012809	Potato	extracellular, vacuole	38.55	35.56
PGSC0003DMT400051238	Potato	extracellular	44.98	35.44

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:102587791	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	UniProt:M1AWG2
PFAM:PF00759	EnsemblPlantsGene:PGSC0003DMG400012235	PGSC:PGSC0003DMG400012235	EnsemblPlants:PGSC0003DMT400031897	ScanProsite:PS00592	ScanProsite:PS00698
PANTHER:PTHR22298	PANTHER:PTHR22298:SF32	SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002951B73
RefSeq:XP_006343778.1	SEG:seg	:	:	:	:

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400012235]

Coordinates

chr8:+:56692398..56694701

Molecular Weight (calculated)

54696.6 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.364

Length

498 amino acids

Sequence
(BLAST)

001: MAHATRNMLI LCFTFFLLLN LSNNFAFAFT SQDYSNALDK SIRFFEGQRS GKLPANQRLK WRADSGLSDG SGYHVDLVGG YYDAGDNVKF GLPMAFTTTL
101: LAWSVIEFGS SMHSQLNNAK AAIRWSTDYL LKAATASPDT LYVQVGDPNQ DHRCWERPED MDTPRNVYKV SPQNPGSDVA AETAAALAAA SIVFKDSDPS
201: YSSTLLRTAQ KVFAFADKYR GSYSDSLSSV VCPFYCSYSG YNDELLWGAS WLHRASKDSS YLAYIQSNGQ TMGANDDDYS FSWDDKRPGT KIILSKDFLE
301: KSTQEFQAYK VHSDNYICSL IPGSPSFQAQ YTPGGLLYKG SESNLQYVTS SSFLLLTYAK YLRSNGGAVS CGSSRFPAER LVELGKKQVD YILGDNPAKI
401: SYMVGFGQKY PLRVHHRGSS LPSVHAHPGH IGCNDGFQSL NSGSPNPNVL VGAIVGGPDS RDNFEDDRNN YQQSEPATYI NAPLVGALAF LSAESTPK

Best Arabidopsis Sequence Match ( AT4G02290.1 )
(BLAST)

001: MALLLVSSSS SYALRVTIFL SFFFFLCNGF SYPTTSSLFN THHHRHHLAK HNYKDALTKS ILFFEGQRSG KLPSNQRMSW RRDSGLSDGS ALHVDLVGGY
101: YDAGDNIKFG FPMAFTTTML SWSVIEFGGL MKSELQNAKI AIRWATDYLL KATSQPDTIY VQVGDANKDH SCWERPEDMD TVRSVFKVDK NIPGSDVAAE
201: TAAALAAAAI VFRKSDPSYS KVLLKRAISV FAFADKYRGT YSAGLKPDVC PFYCSYSGYQ DELLWGAAWL QKATKNIKYL NYIKINGQIL GAAEYDNTFG
301: WDNKHAGARI LLTKAFLVQN VKTLHEYKGH ADNFICSVIP GAPFSSTQYT PGGLLFKMAD ANMQYVTSTS FLLLTYAKYL TSAKTVVHCG GSVYTPGRLR
401: SIAKRQVDYL LGDNPLRMSY MVGYGPKFPR RIHHRGSSLP CVASHPAKIQ CHQGFAIMNS QSPNPNFLVG AVVGGPDQHD RFPDERSDYE QSEPATYINS
501: PLVGALAYFA HAYGQL

Arabidopsis Description

AtGH9B13Endoglucanase 17 [Source:UniProtKB/Swiss-Prot;Acc:O81416]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.