Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 6
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90780 | Canola | endoplasmic reticulum, extracellular | 91.53 | 91.53 |
| CDY05130 | Canola | extracellular, vacuole | 90.73 | 90.73 |
| KRH60035 | Soybean | nucleus | 75.88 | 76.12 |
| KRH41305 | Soybean | nucleus | 75.72 | 75.84 |
| VIT_02s0025g01380.t01 | Wine grape | extracellular, vacuole | 73.16 | 72.81 |
| PGSC0003DMT400012809 | Potato | extracellular, vacuole | 62.46 | 72.41 |
| Solyc08g082250.2.1 | Tomato | extracellular | 72.2 | 72.32 |
| PGSC0003DMT400032028 | Potato | endoplasmic reticulum, extracellular, vacuole | 71.57 | 71.68 |
| GSMUA_Achr4P08520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 63.26 | 67.69 |
| Solyc12g055970.1.1 | Tomato | cytosol, nucleus | 49.52 | 67.1 |
| Os01t0220100-01 | Rice | extracellular, vacuole | 60.38 | 59.06 |
| TraesCS1D01G397400.1 | Wheat | extracellular, vacuole | 58.15 | 58.71 |
| Zm00001d010446_P001 | Maize | vacuole | 58.15 | 58.43 |
| HORVU3Hr1G029470.2 | Barley | endoplasmic reticulum, extracellular, vacuole | 58.15 | 58.43 |
| TraesCS1A01G389300.1 | Wheat | extracellular, vacuole | 57.83 | 58.29 |
| TraesCS4B01G104500.1 | Wheat | extracellular, vacuole | 57.67 | 58.23 |
| EES19222 | Sorghum | vacuole | 58.15 | 58.05 |
| Os05t0212300-01 | Rice | extracellular, vacuole | 58.31 | 58.03 |
| Zm00001d008952_P001 | Maize | extracellular | 59.74 | 57.98 |
| HORVU1Hr1G085830.2 | Barley | vacuole | 57.19 | 57.37 |
| TraesCS3A01G144600.1 | Wheat | extracellular, vacuole | 57.51 | 57.14 |
| EES00050 | Sorghum | extracellular, mitochondrion, plastid, vacuole | 59.58 | 57.03 |
| AT2G32990.1 | Thale cress | extracellular, vacuole | 47.76 | 56.95 |
| Os01t0219600-00 | Rice | mitochondrion | 57.99 | 56.72 |
| TraesCS3D01G153400.1 | Wheat | extracellular, mitochondrion, plastid, vacuole | 57.83 | 55.44 |
| AT2G44550.1 | Thale cress | extracellular, plasma membrane, vacuole | 41.05 | 52.45 |
| AT2G44560.1 | Thale cress | extracellular, vacuole | 40.58 | 51.73 |
| AT2G44540.1 | Thale cress | vacuole | 40.42 | 51.53 |
| AT2G44570.1 | Thale cress | extracellular | 39.78 | 50.61 |
| AT1G02800.1 | Thale cress | extracellular, vacuole | 39.78 | 49.7 |
| AT1G70710.1 | Thale cress | vacuole | 38.98 | 49.59 |
| AT1G23210.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 38.34 | 49.08 |
| AT1G48930.1 | Thale cress | vacuole | 48.88 | 48.8 |
| AT4G09740.1 | Thale cress | extracellular | 36.9 | 48.33 |
| AT4G23560.1 | Thale cress | extracellular | 36.74 | 48.02 |
| AT1G22880.1 | Thale cress | extracellular | 37.06 | 47.93 |
| AT4G02290.1 | Thale cress | plastid | 39.3 | 47.67 |
| AT4G39000.1 | Thale cress | extracellular, vacuole | 36.9 | 46.86 |
| AT1G71380.1 | Thale cress | extracellular | 36.1 | 46.69 |
| KXG31545 | Sorghum | cytosol | 40.1 | 46.14 |
| AT4G39010.1 | Thale cress | extracellular, vacuole | 36.1 | 45.47 |
| AT3G43860.1 | Thale cress | extracellular, vacuole | 34.82 | 44.86 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | EntrezGene:826706 |
| ProteinID:AAC35539.1 | ProteinID:AEE82966.1 | ArrayExpress:AT4G11050 | EnsemblPlantsGene:AT4G11050 | RefSeq:AT4G11050 | TAIR:AT4G11050 |
| RefSeq:AT4G11050-TAIR-G | EnsemblPlants:AT4G11050.1 | TAIR:AT4G11050.1 | EMBL:AY133685 | Symbol:AtGH9C3 | ProteinID:CAB43040.1 |
| ProteinID:CAB81206.1 | InterPro:CBM_49 | GO:GO:0000272 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008810 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0030245 | GO:GO:0030246 | GO:GO:0071555 | InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_Asp/Glu_AS | InterPro:Glyco_hydro_9_His_AS |
| InterPro:IPR012341 | RefSeq:NP_001328091.1 | RefSeq:NP_192843.2 | PFAM:PF00759 | PFAM:PF09478 | PO:PO:0000037 |
| PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009032 | PO:PO:0009052 | PO:PO:0025022 | ScanProsite:PS00592 | ScanProsite:PS00698 | PANTHER:PTHR22298 |
| PANTHER:PTHR22298:SF19 | UniProt:Q8L7I0 | SMART:SM01063 | SUPFAM:SSF48208 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00000A07BF | SEG:seg | : | : | : | : |
Description
AtGH9C3Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0]
Coordinates
chr4:-:6747234..6751536
Molecular Weight (calculated)
69348.9 Da
IEP (calculated)
9.014
GRAVY (calculated)
-0.376
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRTTISIL VVLLLGLVQL AISGHDYKQA LSKSILFFEA QRSGHLPPNQ RVSWRSHSGL YDGKSSGVDL VGGYYDAGDN VKFGLPMAFT VTTMCWSIIE
101: YGGQLESNGE LGHAIDAVKW GTDYFIKAHP EPNVLYGEVG DGKSDHYCWQ RPEEMTTDRR AYKIDRNNPG SDLAGETAAA MAAASIVFRR SDPSYSAELL
201: RHAHQLFEFA DKYRGKYDSS ITVAQKYYRS VSGYNDELLW AAAWLYQATN DKYYLDYLGK NGDSMGGTGW SMTEFGWDVK YAGVQTLVAK VLMQGKGGEH
301: TAVFERYQQK AEQFMCSLLG KSTKNIKKTP GGLIFRQSWN NMQFVTSASF LATVYSDYLS YSKRDLLCSQ GNISPSQLLE FSKSQVDYIL GDNPRATSYM
401: VGYGENYPRQ VHHRGSSIVS FNVDQKFVTC RGGYATWFSR KGSDPNVLTG ALVGGPDAYD NFADQRDNYE QTEPATYNNA PLLGVLARLI SGSTGFDQLL
501: PGVSPTPSPV IIKPAPVPQR KPTKPPAASS PSPITISQKM TNSWKNEGKV YYRYSTILTN RSTKTLKILK ISITKLYGPI WGVTKTGNSF SFPSWMQSLP
601: SGKSMEFVYI HSASPADVLV SNYSLE
101: YGGQLESNGE LGHAIDAVKW GTDYFIKAHP EPNVLYGEVG DGKSDHYCWQ RPEEMTTDRR AYKIDRNNPG SDLAGETAAA MAAASIVFRR SDPSYSAELL
201: RHAHQLFEFA DKYRGKYDSS ITVAQKYYRS VSGYNDELLW AAAWLYQATN DKYYLDYLGK NGDSMGGTGW SMTEFGWDVK YAGVQTLVAK VLMQGKGGEH
301: TAVFERYQQK AEQFMCSLLG KSTKNIKKTP GGLIFRQSWN NMQFVTSASF LATVYSDYLS YSKRDLLCSQ GNISPSQLLE FSKSQVDYIL GDNPRATSYM
401: VGYGENYPRQ VHHRGSSIVS FNVDQKFVTC RGGYATWFSR KGSDPNVLTG ALVGGPDAYD NFADQRDNYE QTEPATYNNA PLLGVLARLI SGSTGFDQLL
501: PGVSPTPSPV IIKPAPVPQR KPTKPPAASS PSPITISQKM TNSWKNEGKV YYRYSTILTN RSTKTLKILK ISITKLYGPI WGVTKTGNSF SFPSWMQSLP
601: SGKSMEFVYI HSASPADVLV SNYSLE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.