Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- endoplasmic reticulum 5
- plasma membrane 4
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72723 | Canola | extracellular | 81.34 | 81.5 |
| Bra033592.1-P | Field mustard | extracellular | 80.32 | 80.49 |
| CDY22399 | Canola | extracellular | 80.32 | 80.49 |
| CDY41954 | Canola | vacuole | 73.63 | 77.73 |
| CDY42597 | Canola | extracellular | 73.43 | 77.52 |
| Bra011882.1-P | Field mustard | extracellular | 77.08 | 77.24 |
| AT4G39010.1 | Thale cress | extracellular, vacuole | 61.05 | 60.56 |
| Solyc01g110340.2.1 | Tomato | extracellular, vacuole | 57.4 | 57.06 |
| VIT_03s0038g00630.t01 | Wine grape | extracellular, vacuole | 57.0 | 56.77 |
| KRH60771 | Soybean | extracellular, vacuole | 56.39 | 56.62 |
| PGSC0003DMT400008105 | Potato | endoplasmic reticulum, extracellular, vacuole | 56.8 | 56.57 |
| KRH51463 | Soybean | extracellular | 56.59 | 56.48 |
| KRH29353 | Soybean | extracellular, vacuole | 56.8 | 55.78 |
| GSMUA_Achr9P20920_001 | Banana | extracellular, vacuole | 48.48 | 54.32 |
| GSMUA_Achr1P07760_001 | Banana | vacuole | 54.77 | 53.89 |
| GSMUA_Achr2P03400_001 | Banana | extracellular | 52.94 | 52.3 |
| AT1G70710.1 | Thale cress | vacuole | 52.13 | 52.24 |
| AT1G23210.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 51.72 | 52.15 |
| Os09t0530200-01 | Rice | mitochondrion | 54.16 | 51.84 |
| AT1G02800.1 | Thale cress | extracellular, vacuole | 52.13 | 51.3 |
| TraesCS5A01G317400.1 | Wheat | plastid | 52.94 | 51.18 |
| TraesCS5B01G318000.1 | Wheat | vacuole | 52.74 | 50.68 |
| HORVU5Hr1G081200.5 | Barley | vacuole | 52.74 | 50.49 |
| AT4G02290.1 | Thale cress | plastid | 50.91 | 48.64 |
| AT1G22880.1 | Thale cress | extracellular | 47.67 | 48.55 |
| Zm00001d021280_P004 | Maize | vacuole | 54.16 | 48.55 |
| OQU89810 | Sorghum | extracellular, plastid, vacuole | 54.56 | 48.12 |
| TraesCS5D01G323700.2 | Wheat | vacuole | 52.94 | 47.45 |
| AT1G71380.1 | Thale cress | extracellular | 45.23 | 46.07 |
| AT4G23560.1 | Thale cress | extracellular | 43.0 | 44.26 |
| AT4G09740.1 | Thale cress | extracellular | 42.6 | 43.93 |
| AT2G44550.1 | Thale cress | extracellular, plasma membrane, vacuole | 43.61 | 43.88 |
| AT2G44540.1 | Thale cress | vacuole | 43.41 | 43.58 |
| AT2G44560.1 | Thale cress | extracellular, vacuole | 43.0 | 43.18 |
| AT2G44570.1 | Thale cress | extracellular | 42.19 | 42.28 |
| AT2G32990.1 | Thale cress | extracellular, vacuole | 44.42 | 41.71 |
| AT3G43860.1 | Thale cress | extracellular, vacuole | 40.16 | 40.74 |
| AT4G11050.1 | Thale cress | vacuole | 46.86 | 36.9 |
| AT1G48930.1 | Thale cress | vacuole | 43.41 | 34.13 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | EntrezGene:830055 |
| ProteinID:AEE87006.1 | EMBL:AK117850 | ArrayExpress:AT4G39000 | EnsemblPlantsGene:AT4G39000 | RefSeq:AT4G39000 | TAIR:AT4G39000 |
| RefSeq:AT4G39000-TAIR-G | EnsemblPlants:AT4G39000.1 | TAIR:AT4G39000.1 | Symbol:AtGH9B17 | ProteinID:CAB38820.1 | ProteinID:CAB80563.1 |
| EMBL:DQ446906 | GO:GO:0000272 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008810 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030245 | GO:GO:0071555 |
| InterPro:Glyco_hydro_9 | InterPro:IPR012341 | RefSeq:NP_195611.1 | PFAM:PF00759 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009032 | PO:PO:0009046 | PANTHER:PTHR22298 | PANTHER:PTHR22298:SF29 | UniProt:Q8GY58 | SUPFAM:SSF48208 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000AA2B9 | SEG:seg | : | : |
Description
AtGH9B17Endoglucanase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY58]
Coordinates
chr4:-:18171589..18173840
Molecular Weight (calculated)
54694.9 Da
IEP (calculated)
7.589
GRAVY (calculated)
-0.197
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MKASIYLVTV FILLLLLLPT AIPHDYSDAL RKSILFFEGQ RSGRLPKQQR MAWRRNSALN DGKNLKTDLV GGYYDAGDNV KFHFPMAFTA TMLAWSSVDF
101: GRYMSQHDFR HNLVAVKWAT DYLLKTVSQL PNRIFVHVGE VQPDHDCWER PEDMDTPRTA FALDAPYPAS DLAGEIAAAL AAASIAFKQA NPKYSAILLN
201: KAVQTFQYAD SHRGSYTDNP GIKQAVCPFY CSVNGYKDEL LWGAAWLRRA TGEDSYLRYL VDNGQAFGES SNYFEFGWDN KVGGVNVLVA KEVLQNNVTA
301: IAAYKDTAEK MMCSFLPETN GPHMSYTPGG LIYKPGSTQL QNTAALSFLL LTYADYLSTS SQQLNCGNLK FQPDSLRRIV KRQVDYVLGD NPMKLSYMIG
401: YGERYPGLIH HRGSSIPSVT VHPAAFGCIA GWNIFSSPNP NPNILIGAVI GGPDVDDRFI GGRTNASETE PTTYINAPFV GVFAYFKSNP NFS
101: GRYMSQHDFR HNLVAVKWAT DYLLKTVSQL PNRIFVHVGE VQPDHDCWER PEDMDTPRTA FALDAPYPAS DLAGEIAAAL AAASIAFKQA NPKYSAILLN
201: KAVQTFQYAD SHRGSYTDNP GIKQAVCPFY CSVNGYKDEL LWGAAWLRRA TGEDSYLRYL VDNGQAFGES SNYFEFGWDN KVGGVNVLVA KEVLQNNVTA
301: IAAYKDTAEK MMCSFLPETN GPHMSYTPGG LIYKPGSTQL QNTAALSFLL LTYADYLSTS SQQLNCGNLK FQPDSLRRIV KRQVDYVLGD NPMKLSYMIG
401: YGERYPGLIH HRGSSIPSVT VHPAAFGCIA GWNIFSSPNP NPNILIGAVI GGPDVDDRFI GGRTNASETE PTTYINAPFV GVFAYFKSNP NFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.