Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032028 | Potato | endoplasmic reticulum, extracellular, vacuole | 98.24 | 98.24 |
| KRH41305 | Soybean | nucleus | 76.48 | 76.48 |
| KRH60035 | Soybean | nucleus | 76.16 | 76.28 |
| VIT_02s0025g01380.t01 | Wine grape | extracellular, vacuole | 76.48 | 75.99 |
| Solyc12g055970.1.1 | Tomato | cytosol, nucleus | 56.0 | 75.76 |
| CDY47849 | Canola | extracellular, vacuole | 73.76 | 74.35 |
| CDY46529 | Canola | extracellular, vacuole | 73.76 | 74.24 |
| CDY34422 | Canola | endoplasmic reticulum, extracellular, vacuole | 73.6 | 74.19 |
| Bra027699.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 73.6 | 74.07 |
| Bra027735.1-P | Field mustard | extracellular, vacuole | 73.28 | 73.87 |
| GSMUA_Achr4P08520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 68.8 | 73.5 |
| AT4G11050.1 | Thale cress | vacuole | 72.32 | 72.2 |
| CDY08373 | Canola | cytosol, extracellular, mitochondrion, nucleus | 48.48 | 71.8 |
| CDX90780 | Canola | endoplasmic reticulum, extracellular | 71.84 | 71.73 |
| CDY05130 | Canola | extracellular, vacuole | 70.88 | 70.77 |
| TraesCS1D01G397400.1 | Wheat | extracellular, vacuole | 61.44 | 61.94 |
| TraesCS4B01G104500.1 | Wheat | extracellular, vacuole | 61.28 | 61.77 |
| TraesCS1A01G389300.1 | Wheat | extracellular, vacuole | 61.28 | 61.67 |
| HORVU1Hr1G085830.2 | Barley | vacuole | 61.28 | 61.38 |
| Os01t0220100-01 | Rice | extracellular, vacuole | 62.4 | 60.94 |
| Os05t0212300-01 | Rice | extracellular, vacuole | 61.28 | 60.89 |
| Zm00001d010446_P001 | Maize | vacuole | 60.48 | 60.67 |
| EES19222 | Sorghum | vacuole | 60.8 | 60.61 |
| HORVU3Hr1G029470.2 | Barley | endoplasmic reticulum, extracellular, vacuole | 60.32 | 60.51 |
| Zm00001d008952_P001 | Maize | extracellular | 61.76 | 59.84 |
| EES00050 | Sorghum | extracellular, mitochondrion, plastid, vacuole | 62.56 | 59.79 |
| TraesCS3A01G144600.1 | Wheat | extracellular, vacuole | 59.68 | 59.21 |
| Os01t0219600-00 | Rice | mitochondrion | 60.16 | 58.75 |
| TraesCS3D01G153400.1 | Wheat | extracellular, mitochondrion, plastid, vacuole | 59.84 | 57.27 |
| Solyc07g049300.2.1 | Tomato | extracellular, vacuole | 46.08 | 57.26 |
| Solyc07g064870.2.1 | Tomato | mitochondrion | 44.96 | 52.72 |
| Solyc05g052530.1.1 | Tomato | extracellular | 40.8 | 52.47 |
| Solyc02g014220.2.1 | Tomato | extracellular | 50.08 | 49.53 |
| KXG31545 | Sorghum | cytosol | 42.4 | 48.71 |
| Solyc09g010210.2.1 | Tomato | plastid | 38.08 | 48.67 |
| Solyc09g075360.2.1 | Tomato | plastid | 39.68 | 48.63 |
| Solyc11g040340.1.1 | Tomato | extracellular, vacuole | 36.96 | 48.23 |
| Solyc08g083210.2.1 | Tomato | extracellular, vacuole | 37.6 | 47.28 |
| Solyc06g066120.2.1 | Tomato | extracellular, vacuole | 36.48 | 46.91 |
| Solyc01g110340.2.1 | Tomato | extracellular, vacuole | 36.32 | 45.77 |
| Solyc08g081620.2.1 | Tomato | extracellular | 36.0 | 44.91 |
| Solyc03g083820.1.1 | Tomato | plastid | 35.2 | 44.18 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | EMBL:AF098292 |
| InterPro:CBM_49 | GO:GO:0000272 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008810 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030245 | GO:GO:0030246 | InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_Asp/Glu_AS |
| InterPro:Glyco_hydro_9_His_AS | InterPro:IPR012341 | PFAM:PF00759 | PFAM:PF09478 | ScanProsite:PS00592 | ScanProsite:PS00698 |
| PANTHER:PTHR22298 | PANTHER:PTHR22298:SF19 | UniProt:Q9ZSP9 | SMART:SM01063 | SUPFAM:SSF48208 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:Solyc08g082250.2 | EnsemblPlants:Solyc08g082250.2.1 | TMHMM:TMhelix | UniParc:UPI00000A9FDA | SEG:seg | : |
Description
Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q9ZSP9]
Coordinates
chr8:+:65093660..65098948
Molecular Weight (calculated)
68926.5 Da
IEP (calculated)
9.595
GRAVY (calculated)
-0.302
Length
625 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGFVGSLVF VILLVVPVAL AGHNYGEALS KSFLFYEAQR SGYLPRNQRV QWRGNSGLND GKASGIDLVG GYYDAGDNVK FGLPMAFTVT MLSWSILEYG
101: RQMAASGELS HAMDAVKWGT DYLLKAHPEP YVLYGEVGDG NTDHYCWQRP EDMTTSRAAY RIDPNHPGSD LAGETAAAMA AASIVFRRYN PGYSNELLNH
201: AHQLFEFADK YRGKYDSSIT VAQKYYRSVS GYADELLWGA AWLYKASNNQ FYLNYLGRNG DALGGTGWSM TEFGWDVKYA GVQTLVAQFL MSGKAGHNAP
301: VFEKYQQKAE NFMCSMLGKG NRNTQKTPGG LIYRQRWNNM QFVTSAAFLA TTYSDYLASA GKYLKCSSGF VSPNELLSFA KSQVDYILGD NPRATSYMVG
401: YGNNYPRQVH HRASSIVSFK VNPSFVSCRG GYATWYSRKA SDPNLLTGAL VGGPDAYDNF ADQRDNYEQT EPATYNNAPL IGVLARLHAG HSGYNQLLPV
501: VPDPKPTPKP APRTKVTPAP RPRVLPVPAN AHVTIQQRAT SSWALNGKTY YRYSAVVTNK SGKTVKNLKL SIVKLYGPLW GLTKYGNSFI FPAWLNSLPA
601: GKSLEFVYIH TASPAIVSVS SYTLV
101: RQMAASGELS HAMDAVKWGT DYLLKAHPEP YVLYGEVGDG NTDHYCWQRP EDMTTSRAAY RIDPNHPGSD LAGETAAAMA AASIVFRRYN PGYSNELLNH
201: AHQLFEFADK YRGKYDSSIT VAQKYYRSVS GYADELLWGA AWLYKASNNQ FYLNYLGRNG DALGGTGWSM TEFGWDVKYA GVQTLVAQFL MSGKAGHNAP
301: VFEKYQQKAE NFMCSMLGKG NRNTQKTPGG LIYRQRWNNM QFVTSAAFLA TTYSDYLASA GKYLKCSSGF VSPNELLSFA KSQVDYILGD NPRATSYMVG
401: YGNNYPRQVH HRASSIVSFK VNPSFVSCRG GYATWYSRKA SDPNLLTGAL VGGPDAYDNF ADQRDNYEQT EPATYNNAPL IGVLARLHAG HSGYNQLLPV
501: VPDPKPTPKP APRTKVTPAP RPRVLPVPAN AHVTIQQRAT SSWALNGKTY YRYSAVVTNK SGKTVKNLKL SIVKLYGPLW GLTKYGNSFI FPAWLNSLPA
601: GKSLEFVYIH TASPAIVSVS SYTLV
001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA
Arabidopsis Description
AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.