Factsheet for Solyc09g075360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 25431925
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25431925 doi

S Muneer, YG Park, A Manivannan, P Soundararajan, BR Jeong

Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. abinayamanivannan@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. brjeong@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. iuyiuy09@naver.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. prabhakaran.s.bioinfo@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. sobiyakhan126@gmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081314	Potato	extracellular	97.45	99.4
KRH68213	Soybean	nucleus	76.86	78.4
VIT_07s0005g00740.t01	Wine grape	plastid	78.43	78.28
KRG96467	Soybean	extracellular, vacuole	63.73	78.12
KRH69273	Soybean	extracellular, vacuole	77.65	78.11
KRH31855	Soybean	nucleus	77.25	78.02
GSMUA_Achr11P...	Banana	extracellular, vacuole	74.31	74.9
CDX97262	Canola	vacuole	75.29	74.71
Bra018559.1-P	Field mustard	extracellular, vacuole	75.1	74.51
CDY22043	Canola	extracellular, vacuole	75.49	74.32
Bra036281.1-P	Field mustard	extracellular, vacuole	75.29	74.13
CDY52780	Canola	extracellular, vacuole	75.1	73.94
AT4G02290.1	Thale cress	plastid	74.51	73.64
AT1G02800.1	Thale cress	extracellular, vacuole	70.98	72.26
CDY32480	Canola	extracellular, vacuole	70.59	70.31
TraesCS1B01G377100.1	Wheat	extracellular, vacuole	68.04	69.82
CDY37459	Canola	endoplasmic reticulum, extracellular	69.61	69.61
Os01t0312800-01	Rice	extracellular	68.04	69.54
Bra032584.1-P	Field mustard	extracellular, vacuole	70.39	69.44
CDY01915	Canola	cytosol	49.22	69.15
TraesCS1D01G365100.1	Wheat	extracellular, vacuole	67.45	69.08
EES00659	Sorghum	vacuole	67.45	68.66
Zm00001d009097_P001	Maize	extracellular	68.04	66.73
HORVU1Hr1G079980.3	Barley	extracellular, vacuole	67.65	65.84
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	67.65	65.46
Solyc08g083210.2.1	Tomato	extracellular, vacuole	61.37	62.98
Solyc09g010210.2.1	Tomato	plastid	55.69	58.08
Solyc11g040340.1.1	Tomato	extracellular, vacuole	52.35	55.74
Solyc01g110340.2.1	Tomato	extracellular, vacuole	52.16	53.63
Solyc03g083820.1.1	Tomato	plastid	50.2	51.41
Solyc08g081620.2.1	Tomato	extracellular	47.84	48.7
Solyc05g052530.1.1	Tomato	extracellular	45.29	47.53
Solyc07g049300.2.1	Tomato	extracellular, vacuole	46.08	46.72
Solyc06g066120.2.1	Tomato	extracellular, vacuole	44.31	46.5
Solyc07g064870.2.1	Tomato	mitochondrion	44.51	42.59
Solyc08g082250.2.1	Tomato	extracellular	48.63	39.68
Solyc02g014220.2.1	Tomato	extracellular	41.76	33.7
Solyc12g055970.1.1	Tomato	cytosol, nucleus	29.8	32.9

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	PFAM:PF00759	ScanProsite:PS00592
ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF55	UniProt:Q42875	SUPFAM:SSF48208	SignalP:SignalP-TM
EnsemblPlantsGene:Solyc09g075360.2	EnsemblPlants:Solyc09g075360.2.1	TMHMM:TMhelix	EMBL:U20590	UniParc:UPI00000A66E6	SEG:seg

Description

Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q42875]

Coordinates

chr9:+:67086865..67090300

Molecular Weight (calculated)

56286.2 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.222

Length

510 amino acids

Sequence
(BLAST)

001: MASCSSSTAA MAMAITIFLF LLSFVTPVFL AKPVHHAHHP RFASHNYRDA LAKSIIYFEG QRSGKLPSSQ RITWRKDSGL SDGKAMGVDL VGGYYDAGDN
101: VKFGFPMAFT TTMLSWSVIE FGGLMKGELL NAKQAIGWAT EYLLKATAHP DTIYVQVGDA GSDHSCWERP EDMDTPRSVY KIDKNTPGTE VAAETAAALA
201: AASLVFRKCN PSYSKILIKR AIRVFAFADK YRGSYSNGLR KVVCPYYCSV SGYEDELLWG AAWLHRATKN PTYLNYIQRN GQTLGAAETD NTFGWDNKHV
301: GARILLSKSF LVQKLQTLHD YKSHADNYIC SLIPGTPASQ AQYTPGGLLF KMDDSNMQYV TSTSFLLVTY AKYLTSARMV VKCGGVVITP KRLRNVAKKQ
401: VDYLLGDNPL KMSYMVGYGA RYPQRIHHRG SSLPSVANHP AKIQCRDGFS VMNSQSPNPN VLVGAVVGGP DEHDRFPDER SDYEQSEPAT YINAPLVGTL
501: TYLAHSFGQL

Best Arabidopsis Sequence Match ( AT4G02290.1 )
(BLAST)

001: MALLLVSSSS SYALRVTIFL SFFFFLCNGF SYPTTSSLFN THHHRHHLAK HNYKDALTKS ILFFEGQRSG KLPSNQRMSW RRDSGLSDGS ALHVDLVGGY
101: YDAGDNIKFG FPMAFTTTML SWSVIEFGGL MKSELQNAKI AIRWATDYLL KATSQPDTIY VQVGDANKDH SCWERPEDMD TVRSVFKVDK NIPGSDVAAE
201: TAAALAAAAI VFRKSDPSYS KVLLKRAISV FAFADKYRGT YSAGLKPDVC PFYCSYSGYQ DELLWGAAWL QKATKNIKYL NYIKINGQIL GAAEYDNTFG
301: WDNKHAGARI LLTKAFLVQN VKTLHEYKGH ADNFICSVIP GAPFSSTQYT PGGLLFKMAD ANMQYVTSTS FLLLTYAKYL TSAKTVVHCG GSVYTPGRLR
401: SIAKRQVDYL LGDNPLRMSY MVGYGPKFPR RIHHRGSSLP CVASHPAKIQ CHQGFAIMNS QSPNPNFLVG AVVGGPDQHD RFPDERSDYE QSEPATYINS
501: PLVGALAYFA HAYGQL

Arabidopsis Description

AtGH9B13Endoglucanase 17 [Source:UniProtKB/Swiss-Prot;Acc:O81416]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.