CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96467	Soybean	extracellular, vacuole	79.0	94.95
KRH31855	Soybean	nucleus	85.2	84.36
KRH69273	Soybean	extracellular, vacuole	85.4	84.22
VIT_07s0005g00740.t01	Wine grape	plastid	82.0	80.23
PGSC0003DMT400081314	Potato	extracellular	78.0	78.0
GSMUA_Achr11P...	Banana	extracellular, vacuole	78.2	77.27
Solyc09g075360.2.1	Tomato	plastid	78.4	76.86
CDX97262	Canola	vacuole	79.0	76.85
AT4G02290.1	Thale cress	plastid	79.2	76.74
Bra018559.1-P	Field mustard	extracellular, vacuole	78.8	76.65
CDY52780	Canola	extracellular, vacuole	79.4	76.64
CDY22043	Canola	extracellular, vacuole	79.4	76.64
Bra036281.1-P	Field mustard	extracellular, vacuole	79.4	76.64
AT1G02800.1	Thale cress	extracellular, vacuole	75.2	75.05
CDY32480	Canola	extracellular, vacuole	74.4	72.66
CDY37459	Canola	endoplasmic reticulum, extracellular	73.6	72.16
Bra032584.1-P	Field mustard	extracellular, vacuole	74.4	71.95
TraesCS1B01G377100.1	Wheat	extracellular, vacuole	70.2	70.62
TraesCS1D01G365100.1	Wheat	extracellular, vacuole	70.0	70.28
Os01t0312800-01	Rice	extracellular	70.0	70.14
CDY01915	Canola	cytosol	50.4	69.42
EES00659	Sorghum	vacuole	69.0	68.86
Zm00001d009097_P001	Maize	extracellular	70.0	67.31
HORVU1Hr1G079980.3	Barley	extracellular, vacuole	70.2	66.98
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	69.8	66.22
KRH41678	Soybean	nucleus	59.4	60.49
KRH60381	Soybean	nucleus	58.8	59.76
KRG97785	Soybean	extracellular	60.2	59.72
KRH56424	Soybean	extracellular, vacuole	55.6	57.44
KRH29353	Soybean	extracellular, vacuole	57.6	57.37
KRH62487	Soybean	extracellular, vacuole	55.0	56.82
KRH60771	Soybean	extracellular, vacuole	55.4	56.42
KRH51463	Soybean	extracellular	55.2	55.87
KRH39987	Soybean	extracellular, vacuole	54.6	55.26
KRH23799	Soybean	extracellular, nucleus, vacuole	45.2	54.33
KRH23800	Soybean	extracellular, vacuole	53.4	53.72
KRH55742	Soybean	vacuole	52.2	53.7
KRH27886	Soybean	extracellular	50.0	48.92
KRG89135	Soybean	extracellular	46.4	47.84
KRH52262	Soybean	extracellular, vacuole	43.8	45.34
KRH14764	Soybean	cytosol, nucleus, vacuole	36.8	45.32
KRH52260	Soybean	extracellular, vacuole	43.6	45.13
KRH73374	Soybean	vacuole	47.0	44.85
KRH73794	Soybean	vacuole	45.8	44.47
KRH14332	Soybean	vacuole	45.4	42.67
KRH41305	Soybean	nucleus	49.4	39.52
KRH60035	Soybean	nucleus	49.2	39.42
KRH29156	Soybean	extracellular, vacuole	46.2	36.84
KRH24186	Soybean	extracellular, vacuole	45.6	36.25

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100793900	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
EMBL:ACUP02002104	EnsemblPlantsGene:GLYMA_03G216100	GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0016798	GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS
UniProt:I1JQN8	InterPro:IPR012341	EnsemblPlants:KRH68213	ProteinID:KRH68213	ProteinID:KRH68213.1	PFAM:PF00759
ScanProsite:PS00592	ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF55	MetaCyc:PWY-6788	SUPFAM:SSF48208
SignalP:SignalP-noTM	UniParc:UPI0002339BEF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:42033033..42035400

Molecular Weight (calculated)

55393.0 Da

IEP (calculated)

8.980

GRAVY (calculated)

-0.218

Length

500 amino acids

Sequence
(BLAST)

001: MRTFSLFSCL FFFLSVFSTT LFHPGHSLHH HPHSATHNYR DALTKSIIFF EGQRSGKLPS NQRMSWRRDS GLSDGSAMHV DLVGGYYDAG DNVKFGFPMA
101: FTTTMLSWSV IEFGGVMKGE LQNAREAIRW ATDYLLKATA HPDIIYVQVG DAVKDHACWE RPEDMDTPRS VFKVDKNNPG SDVAAETAAA LAAASLVFKK
201: VDPTYSKTLV RRAIRVFQFA DKYRGPYSNG LKPVVCPFYC SYSGYQDELL WGATWLHKAT KNPMYLNYIK VNGQTLGAPD SDNTFGWDNK HVGARILLSK
301: EFLVRKVQTL HDYKGHADNF ICSVIPGSSS SQFTPGGLLF KMGDSNMQYV TSTSFILLAY AKYLTKAHVV VNCGGTIVTP KRLRAIAQKQ VDYLLGDNPL
401: KMSYMVGYGP RYPQRIHHRG SSLPSVAVHP GKIQCSAGFS VMNSQSPNPN ILMGAVVGGP DLHDGFPDER SDYEQSEPAT YINAPLVGAL AYLAHSFGQL

Best Arabidopsis Sequence Match ( AT4G02290.1 )
(BLAST)

001: MALLLVSSSS SYALRVTIFL SFFFFLCNGF SYPTTSSLFN THHHRHHLAK HNYKDALTKS ILFFEGQRSG KLPSNQRMSW RRDSGLSDGS ALHVDLVGGY
101: YDAGDNIKFG FPMAFTTTML SWSVIEFGGL MKSELQNAKI AIRWATDYLL KATSQPDTIY VQVGDANKDH SCWERPEDMD TVRSVFKVDK NIPGSDVAAE
201: TAAALAAAAI VFRKSDPSYS KVLLKRAISV FAFADKYRGT YSAGLKPDVC PFYCSYSGYQ DELLWGAAWL QKATKNIKYL NYIKINGQIL GAAEYDNTFG
301: WDNKHAGARI LLTKAFLVQN VKTLHEYKGH ADNFICSVIP GAPFSSTQYT PGGLLFKMAD ANMQYVTSTS FLLLTYAKYL TSAKTVVHCG GSVYTPGRLR
401: SIAKRQVDYL LGDNPLRMSY MVGYGPKFPR RIHHRGSSLP CVASHPAKIQ CHQGFAIMNS QSPNPNFLVG AVVGGPDQHD RFPDERSDYE QSEPATYINS
501: PLVGALAYFA HAYGQL

Arabidopsis Description

AtGH9B13Endoglucanase 17 [Source:UniProtKB/Swiss-Prot;Acc:O81416]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.