CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	KRG98502	AT4G26630.1	25387881
AT4G23560.1	KRG98507	AT4G26630.1	25387881
AT4G23560.1	KRH46360	AT4G26630.1	25387881
AT4G23560.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	70.84	71.97
AT4G23560.1	Thale cress	extracellular	66.14	70.56
Bra013709.1-P	Field mustard	extracellular	65.95	70.21
CDY10895	Canola	extracellular	65.95	70.21
CDY44116	Canola	extracellular	65.95	70.21
Bra019296.1-P	Field mustard	extracellular, vacuole	65.56	69.79
CDX94202	Canola	vacuole	65.56	69.79
CDY10945	Canola	extracellular, vacuole	65.56	69.79
AT4G09740.1	Thale cress	extracellular	63.8	68.2
PGSC0003DMT400031762	Potato	extracellular	65.17	66.33
Solyc08g081620.2.1	Tomato	extracellular	64.77	66.07
Zm00001d032271_P001	Maize	extracellular	58.12	58.12
EES13778	Sorghum	extracellular	58.71	58.03
Os08t0387400-01	Rice	extracellular	58.32	57.75
TraesCS1D01G090100.1	Wheat	extracellular	56.75	57.65
TraesCS1B01G107700.1	Wheat	extracellular	56.95	57.51
TraesCS1A01G088700.1	Wheat	extracellular	56.36	56.92
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	56.56	54.22
KRH31855	Soybean	nucleus	49.71	50.3
KRG96467	Soybean	extracellular, vacuole	40.7	50.0
KRH68213	Soybean	nucleus	48.92	50.0
KRH69273	Soybean	extracellular, vacuole	49.51	49.9
KRG97785	Soybean	extracellular	48.92	49.6
KRH56424	Soybean	extracellular, vacuole	46.97	49.59
KRH62487	Soybean	extracellular, vacuole	46.18	48.76
KRH41678	Soybean	nucleus	46.58	48.47
KRH60381	Soybean	nucleus	46.18	47.97
KRH60771	Soybean	extracellular, vacuole	45.6	47.45
KRH29353	Soybean	extracellular, vacuole	46.18	47.01
KRH51463	Soybean	extracellular	45.4	46.96
KRH52260	Soybean	extracellular, vacuole	44.23	46.79
KRH52262	Soybean	extracellular, vacuole	44.03	46.58
KRH55742	Soybean	vacuole	43.64	45.88
KRH39987	Soybean	extracellular, vacuole	44.03	45.55
KRH23799	Soybean	extracellular, nucleus, vacuole	36.99	45.43
KRH23800	Soybean	extracellular, vacuole	43.44	44.67
KRG89135	Soybean	extracellular	41.29	43.51
KRH73794	Soybean	vacuole	43.05	42.72
KRH73374	Soybean	vacuole	43.44	42.37
KRH14764	Soybean	cytosol, nucleus, vacuole	33.66	42.36
KRH14332	Soybean	vacuole	43.44	41.73
KRH24186	Soybean	extracellular, vacuole	45.6	37.04
KRH29156	Soybean	extracellular, vacuole	45.01	36.68
KRH60035	Soybean	nucleus	44.23	36.22
KRH41305	Soybean	nucleus	43.84	35.84

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	EntrezGene:547834	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
EMBL:ACUP02006735	EnsemblPlantsGene:GLYMA_11G021100	GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0016798	GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS
UniProt:I1LGD0	InterPro:IPR012341	EnsemblPlants:KRH27886	ProteinID:KRH27886	ProteinID:KRH27886.1	PFAM:PF00759
ScanProsite:PS00592	ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF22	MetaCyc:PWY-6788	SUPFAM:SSF48208
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000233C9AD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:1503824..1507191

Molecular Weight (calculated)

55930.4 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.252

Length

511 amino acids

Sequence
(BLAST)

001: MGYYLVFVGV FLWCAMASHI NGLAMMDGKL MSSSANNYDY GDALGKAILF FEGQRSGNLP ATQRVKWRGD SALSDGKLQN VDLIGGYYDA GDNVKFGWPM
101: AFTTSLLSWA AVEYESEISS VNQLGYLHSA IHWGADFILR AHTSPTTLYT QVGDGNADHN CWERPEDMDT ARAVYKIDAN SPGTEAAAES AAALAAASIV
201: FKKIDANYSS TLLSKSKSLF DFADKYRGSY SGSCPFYCSY SGYQDELLWA ASWLYKASGE SKYLSYSIGN QGWSQAVSEF SWDNKYVGAQ TLLTEEFYGG
301: KKDLAKFKSD VESFICSVMP ASSSLQIKTT PGGLLFTRDS SNLQYATSST MVLFIFSKIL NRNHIDRIHC GSALFTPSQI RAFAKTQVDY ILGSNPMKMS
401: YMVGFGSKYP KQLHHRGSSI PSINVHPTKV GCNDGLSVYY NSANPNPNTH VGAIVGGPDS NDRFSDARSD YSHSEPTTYM NAAFVASVSA LLGKTTDRNQ
501: IQDSAVSPYR C

Best Arabidopsis Sequence Match ( AT4G23560.1 )
(BLAST)

001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG

Arabidopsis Description

AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.