Factsheet for Bra019296.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	Bra010432.1-P	AT4G26630.1	25387881
AT4G23560.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10945	Canola	extracellular, vacuole	100.0	100.0
Bra013709.1-P	Field mustard	extracellular	86.25	86.25
AT4G23560.1	Thale cress	extracellular	82.08	82.25
AT4G09740.1	Thale cress	extracellular	80.21	80.54
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	68.75	65.61
KRH27886	Soybean	extracellular	69.79	65.56
Solyc08g081620.2.1	Tomato	extracellular	66.25	63.47
PGSC0003DMT400031762	Potato	extracellular	66.25	63.35
TraesCS1D01G090100.1	Wheat	extracellular	58.96	56.26
EES13778	Sorghum	extracellular	60.21	55.9
TraesCS1B01G107700.1	Wheat	extracellular	58.75	55.73
Zm00001d032271_P001	Maize	extracellular	59.17	55.58
Os08t0387400-01	Rice	extracellular	59.58	55.43
TraesCS1A01G088700.1	Wheat	extracellular	58.33	55.34
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	58.75	52.91
Bra011881.1-P	Field mustard	cytosol	48.54	49.05
Bra016143.1-P	Field mustard	extracellular, plastid, vacuole	49.38	48.97
Bra034983.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.0	48.87
Bra032584.1-P	Field mustard	extracellular, vacuole	52.5	48.74
Bra000354.1-P	Field mustard	extracellular, plastid, vacuole	48.33	48.74
Bra004846.1-P	Field mustard	nucleus	47.71	48.72
Bra007982.1-P	Field mustard	extracellular	48.33	47.93
Bra019455.1-P	Field mustard	golgi, vacuole	48.33	47.74
Bra012349.1-P	Field mustard	extracellular, plastid, vacuole	47.92	47.62
Bra018559.1-P	Field mustard	extracellular, vacuole	50.83	47.47
Bra004845.1-P	Field mustard	extracellular	47.92	47.03
Bra004844.1-P	Field mustard	extracellular, vacuole	47.71	46.83
Bra036281.1-P	Field mustard	extracellular, vacuole	50.21	46.53
Bra007983.1-P	Field mustard	extracellular	46.67	46.38
Bra024571.1-P	Field mustard	extracellular	47.71	46.36
Bra003946.1-P	Field mustard	extracellular	47.08	46.31
Bra016192.1-P	Field mustard	extracellular, vacuole	47.5	45.69
Bra033592.1-P	Field mustard	extracellular	45.83	44.72
Bra011882.1-P	Field mustard	extracellular	45.62	44.51
Bra033591.1-P	Field mustard	extracellular, vacuole	43.75	42.86
Bra005536.1-P	Field mustard	vacuole	45.21	41.57
Bra021821.1-P	Field mustard	vacuole	42.92	40.47
Bra032270.1-P	Field mustard	extracellular	48.33	38.1
Bra027735.1-P	Field mustard	extracellular, vacuole	49.17	38.06
Bra027699.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	49.17	38.0
Bra018765.1-P	Field mustard	vacuole	47.71	36.7

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	EnsemblPlantsGene:Bra019296
EnsemblPlants:Bra019296.1	EnsemblPlants:Bra019296.1-P	GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0016798	GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS
InterPro:IPR012341	UniProt:M4DS03	PFAM:PF00759	ScanProsite:PS00592	ScanProsite:PS00698	PANTHER:PTHR22298
PANTHER:PTHR22298:SF22	SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002540EF3	SEG:seg

Description

AT4G23560 (E=1e-223) AtGH9B15 | AtGH9B15 (Arabidopsis thaliana glycosyl hydrolase 9B15); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds

Coordinates

chrA03:-:25120826..25123340

Molecular Weight (calculated)

52609.7 Da

IEP (calculated)

8.192

GRAVY (calculated)

-0.315

Length

480 amino acids

Sequence
(BLAST)

001: MGKLLLVMLV VLIMAFQSLG TLDYGHALNK SILFFEGQRS GKLPVKQRVN WRADSALSDG SPDNVNLIGG YYDAGDNVKF VWPMAFTTTL LSWAAIEYQK
101: EISSVNQLGY LRSAIKWGTD FIIRAHPSPT TLYTQVGDGN ADHACWQRPE DMDTARTLYK ISSSSPGSEV ASEAAAALAS ASLVFKSFDS KYSSTLLSHA
201: KSLFEFADQH RGSYQASCPF YCSHSGYNDE LLWAAAWLYK ATGENKYLSY VVSNQGWSQA VNEFSWDNKF AGAQALLASE FYNGKNELGK FKNDVESFVC
301: ALMPGSSSQQ IKPTPGGLLF TRDGSNLQYA TAATTVLFHY SKTLTRARVG SIQCGSTKFT ASQIHDFAKS QVDYILGNNP KKMSYMVGFG NKCPTQPHHR
401: SSSLPSIKSK PDKIDCKGGF SYFNSDQPNP NEHTGAIVGG PDKSDHFSDK RSDYAHAEPT TYINAAFIGP VAALICRNSN

Best Arabidopsis Sequence Match ( AT4G23560.1 )
(BLAST)

001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG

Arabidopsis Description

AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.