Factsheet for TraesCS1B01G107700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G23560.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G23560.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G090100.1	Wheat	extracellular	96.84	97.42
TraesCS1A01G088700.1	Wheat	extracellular	96.25	96.25
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	93.87	89.12
Os08t0387400-01	Rice	extracellular	80.24	78.68
Zm00001d032271_P001	Maize	extracellular	75.69	74.95
EES13778	Sorghum	extracellular	75.69	74.08
Bra013709.1-P	Field mustard	extracellular	55.93	58.96
CDX94202	Canola	vacuole	55.93	58.96
CDY44116	Canola	extracellular	55.93	58.96
AT4G23560.1	Thale cress	extracellular	55.73	58.87
CDY10945	Canola	extracellular, vacuole	55.73	58.75
Bra019296.1-P	Field mustard	extracellular, vacuole	55.73	58.75
CDY10895	Canola	extracellular	55.53	58.54
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	57.91	58.25
AT4G09740.1	Thale cress	extracellular	54.35	57.53
KRH27886	Soybean	extracellular	57.51	56.95
Solyc08g081620.2.1	Tomato	extracellular	55.53	56.09
PGSC0003DMT400031762	Potato	extracellular	55.34	55.78
TraesCS1B01G377100.1	Wheat	extracellular, vacuole	48.02	48.89
TraesCS5B01G169500.1	Wheat	unclear	47.83	48.5
TraesCS5B01G169600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	47.43	48.29
TraesCS7B01G219100.1	Wheat	extracellular	45.85	46.96
TraesCS6B01G325400.1	Wheat	extracellular	44.66	45.56
TraesCS1B01G090700.1	Wheat	extracellular, vacuole	43.68	45.1
TraesCS2B01G327200.1	Wheat	nucleus	44.86	44.69
TraesCS7B01G111700.1	Wheat	extracellular	46.05	44.13
TraesCS5B01G318000.1	Wheat	vacuole	44.66	44.05
TraesCS6B01G122000.1	Wheat	vacuole	34.78	42.93
TraesCS6B01G368000.1	Wheat	extracellular	42.29	42.89
TraesCS7B01G046900.1	Wheat	vacuole	43.68	42.66
TraesCS7B01G047000.1	Wheat	extracellular, vacuole	42.89	42.14
TraesCS6B01G342600.1	Wheat	vacuole	44.27	42.03
TraesCS7B01G104600.1	Wheat	vacuole	44.27	42.03
TraesCS6B01G150300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.89	41.02
TraesCS5B01G201100.1	Wheat	vacuole	41.5	38.96
TraesCS2B01G586600.1	Wheat	extracellular	42.89	35.34
TraesCS4B01G104500.1	Wheat	extracellular, vacuole	42.89	35.0

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_9	InterPro:IPR012341	PFAM:PF00759	PANTHER:PTHR22298	PANTHER:PTHR22298:SF22	SUPFAM:SSF48208
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1B01G107700	EnsemblPlants:TraesCS1B01G107700.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:119772468..119774999

Molecular Weight (calculated)

54484.8 Da

IEP (calculated)

5.847

GRAVY (calculated)

-0.193

Length

506 amino acids

Sequence
(BLAST)

001: MATMAVKAWV VAMMLVVHCF DVGLGAGGDG LCLGSPDYGD ALAKAILFFE GQRSGRLPAN QRARWRSNSA LADGRPENVN LTGGYYDAGD NVKFGFPMAF
101: TVTLLSWSAI EYRGDVAAAG QLGNLRAAIH WGVDFLLRAH TSPTTLYTQV GDGNADHGCW ERPEDMDTPR TLYKITADSP GSEAAGEAAA ALAAAYLVLK
201: EDGDKAFASR LLAASKSLFE LANNYRGSFQ SSCPFYCSYS GFQDELLWAS AWLYRATKDG KYLDFLRQNQ GSSNPVNEFS WDNKQVGAQM LATQEYLKGR
301: RELARYKANL DSFVCALMPD SGNTQIRTTR GGLLFTRDSV NMQYTTTAAL VLSIYSKALQ SWDVSDGVHC SAASFSPDQI ASFAASQVDY ILGSNPMGMS
401: YMVGFGGAFP RRIHHRAASI PSIEVLSRRV PCNEGFSSWL PTSDPNPNVH VGAIVGGPDE NDQFGDNRGD SAHSEPATYI NAAFVGACAA AMGQSQKPAS
501: PTLSSY

Best Arabidopsis Sequence Match ( AT4G23560.1 )
(BLAST)

001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG

Arabidopsis Description

AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.