CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	EER91265	AT4G26630.1	25387881
AT4G23560.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032271_P001	Maize	extracellular	89.17	90.22
TraesCS1D01G090100.1	Wheat	extracellular	74.47	76.54
TraesCS1A01G088700.1	Wheat	extracellular	74.47	76.09
TraesCS1B01G107700.1	Wheat	extracellular	74.08	75.69
Os08t0387400-01	Rice	extracellular	75.44	75.58
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	73.69	71.48
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	59.57	61.23
CDX94202	Canola	vacuole	56.09	60.42
Bra019296.1-P	Field mustard	extracellular, vacuole	55.9	60.21
CDY10945	Canola	extracellular, vacuole	55.9	60.21
Bra013709.1-P	Field mustard	extracellular	55.51	59.79
CDY44116	Canola	extracellular	55.51	59.79
AT4G23560.1	Thale cress	extracellular	55.32	59.71
AT4G09740.1	Thale cress	extracellular	54.74	59.2
CDY10895	Canola	extracellular	54.93	59.17
KRH27886	Soybean	extracellular	58.03	58.71
Solyc08g081620.2.1	Tomato	extracellular	55.9	57.68
PGSC0003DMT400031762	Potato	extracellular	55.71	57.37
EES00659	Sorghum	vacuole	46.42	47.9
KXG21209	Sorghum	cytosol	35.01	46.53
EES04405	Sorghum	plasma membrane, vacuole	45.84	46.11
EES07307	Sorghum	vacuole	44.68	45.83
EES13257	Sorghum	extracellular	43.91	45.22
EES12225	Sorghum	plastid	44.29	44.47
EES05890	Sorghum	vacuole	42.55	44.27
EES15002	Sorghum	endoplasmic reticulum, extracellular	42.75	43.68
EES06282	Sorghum	extracellular, vacuole	44.49	42.99
OQU76161	Sorghum	vacuole	36.56	42.86
EER98860	Sorghum	golgi, mitochondrion, vacuole	43.13	41.14
EER89549	Sorghum	mitochondrion	44.68	41.1
OQU89810	Sorghum	extracellular, plastid, vacuole	44.29	40.97
EES19222	Sorghum	vacuole	44.68	36.84
EES00050	Sorghum	extracellular, mitochondrion, plastid, vacuole	45.45	35.93
EES13091	Sorghum	vacuole	43.52	35.71
EES07289	Sorghum	mitochondrion	44.1	30.08
KXG31545	Sorghum	cytosol	27.47	26.1

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	EntrezGene:8070020
UniProt:C5YKM9	EnsemblPlants:EES13778	ProteinID:EES13778	ProteinID:EES13778.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	InterPro:Glyco_hydro_9	InterPro:IPR012341	PFAM:PF00759	PANTHER:PTHR22298
PANTHER:PTHR22298:SF22	MetaCyc:PWY-6788	EnsemblPlantsGene:SORBI_3007G119300	SUPFAM:SSF48208	unigene:Sbi.9883	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0001A87F00	RefSeq:XP_002444283.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:51398789..51402623

Molecular Weight (calculated)

56170.5 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.269

Length

517 amino acids

Sequence
(BLAST)

001: MAVKVWVFVV ALMFIGVVVV VGLGADDGSS RDGAGSLSRC RLSSPNYHGA LAKAILFFEG QRSGRLPANQ RVKWRGDSAL TDGQPENVNL TGGYYDAGDN
101: VKFGFPMAFS VTLLSWSAVE YRDEVAAAGQ LRYLRSAIQW GADFLLRAHT SPTTLYTQVG DGNADHQCWE RPEDMDTPRT LYKITQSSPG SEAAGEAAAA
201: LAAAYLVFRD DRDKSLATQL LAASRSLFDF ANNYRGSYQL SCPFYCSYSG YQDELQWASA WLYRATKDSK YLDFLQNNQG GSGTEFSWDN KYPGAQLLAT
301: QEYLGGRTEL EGYKRGLDSF VCAVMPNSGN TQIHTTPGGL LFTRDSVNLQ YTTTAALLLS IYSKTLTSVG DQVVQCSAAS FSPDQISSFA TSQVDYILGD
401: NPKGMSYMVG FSSKFPRRIH HRGSSIPSIK VLPRKVTCNE GFSSWFPTSN ANPNNHVGAI VGGPDGNDQF SDNREDSTHS EPATYINAAF VGACAAALGQ
501: QNQLKEPVDN IAPVDII

Best Arabidopsis Sequence Match ( AT4G23560.1 )
(BLAST)

001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG

Arabidopsis Description

AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.