CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0247900-01	Rice	cytosol	79.82	77.02
Zm00001d044744_P001	Maize	extracellular, vacuole	93.65	76.2
TraesCS7D01G201000.1	Wheat	extracellular, vacuole	84.35	69.92
TraesCS7B01G104600.1	Wheat	vacuole	83.9	69.42
HORVU7Hr1G040680.3	Barley	vacuole	82.99	65.47
TraesCS7A01G197900.1	Wheat	extracellular, vacuole	83.9	63.46
KRH14764	Soybean	cytosol, nucleus, vacuole	57.14	62.07
EES15002	Sorghum	endoplasmic reticulum, extracellular	69.16	60.28
EER98860	Sorghum	golgi, mitochondrion, vacuole	67.12	54.61
PGSC0003DMT400001781	Potato	extracellular, vacuole	61.22	53.68
Solyc07g049300.2.1	Tomato	extracellular, vacuole	61.0	53.48
Bra021821.1-P	Field mustard	vacuole	61.0	52.85
Bra005536.1-P	Field mustard	vacuole	61.22	51.72
CDY17123	Canola	vacuole	61.22	51.72
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	60.77	51.44
CDY19428	Canola	vacuole	60.54	51.15
CDY19174	Canola	vacuole	61.0	51.04
KRH73374	Soybean	vacuole	60.54	50.95
AT2G32990.1	Thale cress	extracellular, vacuole	60.54	50.86
GSMUA_Achr7P02160_001	Banana	vacuole	58.73	50.78
GSMUA_Achr8P22580_001	Banana	endoplasmic reticulum, golgi, mitochondrion, vacuole	58.73	50.78
EES06282	Sorghum	extracellular, vacuole	61.0	50.28
CDY23776	Canola	vacuole	59.86	50.19
KXG21209	Sorghum	cytosol	43.08	48.84
EES07289	Sorghum	mitochondrion	80.05	46.57
EES19222	Sorghum	vacuole	55.33	38.92
EES00659	Sorghum	vacuole	43.76	38.52
EES00050	Sorghum	extracellular, mitochondrion, plastid, vacuole	54.88	37.0
EES13778	Sorghum	extracellular	42.86	36.56
EES07307	Sorghum	vacuole	41.5	36.31
EES13257	Sorghum	extracellular	41.04	36.06
EES04405	Sorghum	plasma membrane, vacuole	41.95	35.99
EES13091	Sorghum	vacuole	50.57	35.4
EES12225	Sorghum	plastid	40.59	34.76
EES05890	Sorghum	vacuole	37.87	33.6
EER89549	Sorghum	mitochondrion	40.59	31.85
KXG31545	Sorghum	cytosol	37.87	30.7
OQU89810	Sorghum	extracellular, plastid, vacuole	38.78	30.59

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	UniProt:A0A1W0VSD1
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	EnsemblPlants:OQU76161	ProteinID:OQU76161
ProteinID:OQU76161.1	PFAM:PF00759	ScanProsite:PS00592	PANTHER:PTHR22298	PANTHER:PTHR22298:SF52	MetaCyc:PWY-6788
EnsemblPlantsGene:SORBI_3010G101900	SUPFAM:SSF48208	SignalP:SignalP-noTM	UniParc:UPI0009DC937D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:9424298..9427933

Molecular Weight (calculated)

48449.5 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.308

Length

441 amino acids

Sequence
(BLAST)

001: MAFTVTMLSW SLLEYGADVA DAGELAHALE SIKWGTDYFI KAHTRPDELW AEVGDGDTDH YCWQRPEDMT TSRQAYKVDR DRPGSDVAGE TAAAMAAASM
101: VFREHNPHYA SLLLHHALQL FEFADKYRGK YDSSIAEVKS YYASVSGYHD ELLWAALWLH RATGRPHYLD YVVHNADDFG GTGWAITEFS WDVKYAGVQI
201: LAARLLLSGE HSPRHRETLE QYRAKAEHYV CACLGKNAAA DGNVERSPGG MLYVRQWNNM QYVTSAAFLL SVYSGYLSSS SSSSSSSVTC GAGGEAAAAA
301: SAGEVFALAR AQVDYVLGSN PRGMSYLVGY GARFPARVHH RAASIVPYKH SKEFIGCAQG FDDWFIRKGA NPNVVVGAIV GGPDRRDRFR DQRENYMQTE
401: ACTYNTAPMV GMFAMLNRLA RDEAAAAASQ PGGETATSVN R

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.