Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 6
- plasma membrane 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra039504.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G11590.1 | Bra039504.1-P | AT2G03190.1 | 12169662 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85540 | Canola | cytosol | 91.61 | 98.33 |
| AT4G11590.1 | Thale cress | cytosol | 50.93 | 41.31 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 44.41 | 37.14 |
| Bra023625.1-P | Field mustard | mitochondrion | 28.57 | 30.98 |
| Bra004091.1-P | Field mustard | mitochondrion | 35.71 | 30.26 |
| Bra023624.1-P | Field mustard | plastid | 33.23 | 29.64 |
| Bra023493.1-P | Field mustard | nucleus, plasma membrane, vacuole | 34.78 | 29.55 |
Protein Annotations
| EnsemblPlants:Bra023531.1 | EnsemblPlants:Bra023531.1-P | EnsemblPlantsGene:Bra023531 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 |
| PANTHER:PTHR31790:SF10 | PFAM:PF00646 | PFAM:PF08268 | SEG:seg | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI00025436B7 | UniProt:M4E428 | MapMan:35.1 | : | : | : |
Description
AT4G11590 (E=4e-034) | F-box family protein
Coordinates
chrA02:+:3807496..3808592
Molecular Weight (calculated)
37050.8 Da
IEP (calculated)
9.727
GRAVY (calculated)
-0.306
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSLNTEIIR RLPAKSVARF LLVSKSWANL ITNRDFIKSF ETRSCSSQPR LLVCFIGRTK PCKRQYCYFF SSSSSSTTFL SRVKCPREDP ECFPCLPHYA
101: NGLIRLGYGE KKLICNPSTG KSIDLPKVKN IMSVSKSLFG YDPVNDEYKI LCMTKKSPDD GVVYFVAKTG AEYLCLMKFD LRYEKWDLLT RLSSDMSRLG
201: EDCTLINYEG KVAITTTNTT GDTFNVWVID QAAREPGWLK KSFSIESWKF LSKLSIYGST HTGEFILAPR YYSHDFSGIL YNPNTNGLRK IKVDVKGSDE
301: FKHGRRMRTM VFWEYFQSIR LL
101: NGLIRLGYGE KKLICNPSTG KSIDLPKVKN IMSVSKSLFG YDPVNDEYKI LCMTKKSPDD GVVYFVAKTG AEYLCLMKFD LRYEKWDLLT RLSSDMSRLG
201: EDCTLINYEG KVAITTTNTT GDTFNVWVID QAAREPGWLK KSFSIESWKF LSKLSIYGST HTGEFILAPR YYSHDFSGIL YNPNTNGLRK IKVDVKGSDE
301: FKHGRRMRTM VFWEYFQSIR LL
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Arabidopsis Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.