Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- extracellular 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81596 | Canola | cytosol | 96.12 | 95.07 |
| Bra004091.1-P | Field mustard | mitochondrion | 68.42 | 65.0 |
| Bra023625.1-P | Field mustard | mitochondrion | 50.14 | 60.94 |
| Bra023531.1-P | Field mustard | mitochondrion | 29.64 | 33.23 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 35.18 | 32.99 |
| AT1G31000.1 | Thale cress | cytosol | 32.96 | 32.6 |
| Bra023493.1-P | Field mustard | nucleus, plasma membrane, vacuole | 30.19 | 28.76 |
Protein Annotations
| EnsemblPlants:Bra023624.1 | EnsemblPlants:Bra023624.1-P | EnsemblPlantsGene:Bra023624 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 |
| PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | PFAM:PF00646 | PFAM:PF08268 | SEG:seg | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000254312D | UniProt:M4E4C1 | MapMan:35.1 | : |
Description
AT5G15660 (E=4e-036) | F-box family protein
Coordinates
chrA02:+:4246028..4247113
Molecular Weight (calculated)
41150.6 Da
IEP (calculated)
8.006
GRAVY (calculated)
-0.073
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLHLCDNVV PLDLQIKILS LLPSKSLARF MTVSKSWQEI ISSKSFIRSR SLTHPLRFLL ALYDTDYETD HLSYSFFSSS SSSSSIPTTF LSRVTLPLHK
101: TYYPTYYVNG LLNIGEIICN PCTGKTVYLP ENIVCGRTGT AERFFGYDPV NNQYKVLCLT PYTEGDTKTN YVQVFTLGAK PKTWRFIDCD IPHITWSDGL
201: CIDGSLYYIA SLDKGMCLMR FDLNSEKFDV FARLSKKMDT LFFLDEGSKT LINYHGKVAM AIRPSYSAPS VDLFVFQAGK QDYKAKSFDN IPQLHLPIKG
301: VINHMGDIVF APLHSRIEVN VIHHDLKGAS FEKMRFDVDA KSEREFRSNY FMGYVESLML L
101: TYYPTYYVNG LLNIGEIICN PCTGKTVYLP ENIVCGRTGT AERFFGYDPV NNQYKVLCLT PYTEGDTKTN YVQVFTLGAK PKTWRFIDCD IPHITWSDGL
201: CIDGSLYYIA SLDKGMCLMR FDLNSEKFDV FARLSKKMDT LFFLDEGSKT LINYHGKVAM AIRPSYSAPS VDLFVFQAGK QDYKAKSFDN IPQLHLPIKG
301: VINHMGDIVF APLHSRIEVN VIHHDLKGAS FEKMRFDVDA KSEREFRSNY FMGYVESLML L
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Arabidopsis Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.