CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66614	Canola	cytosol, plastid	97.81	97.81
Bra023624.1-P	Field mustard	plastid	95.07	96.12
CDY02702	Canola	plastid	91.78	90.54
CDY66613	Canola	mitochondrion	64.93	67.71
CDX81594	Canola	cytosol	46.03	66.4
CDY66612	Canola	cytosol	26.3	65.75
CDY07426	Canola	mitochondrion	67.95	65.26
CDY42412	Canola	mitochondrion	58.08	62.72
CDX81593	Canola	cytosol	30.41	62.36
CDY02701	Canola	mitochondrion	63.84	61.8
CDY28066	Canola	cytosol	46.03	59.79
CDX69509	Canola	golgi, nucleus, plasma membrane	18.63	34.87
AT1G31000.1	Thale cress	cytosol	32.6	32.6
CDX85540	Canola	cytosol	25.75	31.33
CDY26448	Canola	golgi, nucleus, plasma membrane	27.95	29.57
CDX85577	Canola	nucleus, plasma membrane, vacuole	29.59	28.5
CDY45366	Canola	cytosol	13.42	28.49
CDX91015	Canola	cytosol, plasma membrane, vacuole	28.77	27.7
CDY49895	Canola	cytosol	1.92	25.93

Protein Annotations

EnsemblPlants:CDX81596	EnsemblPlantsGene:GSBRNA2T00135327001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	ProteinID:CDX81596	ProteinID:CDX81596.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF46BA	MapMan:35.1	:

Description

BnaC02g19000D

Coordinates

chrLK031825:+:1869013..1872263

Molecular Weight (calculated)

41528.1 Da

IEP (calculated)

8.245

GRAVY (calculated)

-0.094

Length

365 amino acids

Sequence
(BLAST)

001: MSLHLCDNVV PLDLQIKILS LLPSKSLARF MTVSKSWQEI ISSKSFIRSR SLTHPLRFLL ALYDTDYETR CRNCSFFSSS SLPSSSSTSI PTTFLSKVTL
101: PLHKTYYPTY YVNGLLNIGE IICNPCTGKT VYLPENIVCG RTGTAERFFG YDPVNNQYKV LCLTSYTEGD TKTNYVQVFT LGAKPKTWRF IDCDIPHITW
201: SDGLCIDGSL YYIASLDKGM CLMRFDLNSE KFDVFARLSK KMDTLFFLDE GSKTLINYHG KVAMAIRPSY SAPSVDLFVF QAGKQDYKAK SFDNIPQLHL
301: PIKGVINHMG DIVFAPIHSR SEVNVIHHDL KGASFEKMKF DVDAKSEWEF RSNYFMGYVE SHMLL

Best Arabidopsis Sequence Match ( AT4G11590.1 )
(BLAST)

001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL

Arabidopsis Description

F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.