Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX85577 | Canola | nucleus, plasma membrane, vacuole | 94.99 | 94.99 |
Bra023493.1-P | Field mustard | nucleus, plasma membrane, vacuole | 94.46 | 94.46 |
CDY49895 | Canola | cytosol | 2.9 | 40.74 |
AT1G19160.1 | Thale cress | cytosol | 33.51 | 36.29 |
CDX69509 | Canola | golgi, nucleus, plasma membrane | 17.68 | 34.36 |
AT5G52610.1 | Thale cress | golgi, plasma membrane | 31.66 | 34.19 |
CDY26448 | Canola | golgi, nucleus, plasma membrane | 29.82 | 32.75 |
CDX85540 | Canola | cytosol | 25.86 | 32.67 |
CDY45366 | Canola | cytosol | 14.78 | 32.56 |
CDY28066 | Canola | cytosol | 22.16 | 29.89 |
CDY42412 | Canola | mitochondrion | 26.12 | 29.29 |
CDY02702 | Canola | plastid | 28.23 | 28.92 |
CDX81596 | Canola | cytosol | 27.7 | 28.77 |
CDY66614 | Canola | cytosol, plastid | 27.7 | 28.77 |
CDY66613 | Canola | mitochondrion | 25.33 | 27.43 |
CDY02701 | Canola | mitochondrion | 26.91 | 27.06 |
CDY07426 | Canola | mitochondrion | 26.39 | 26.32 |
CDX81594 | Canola | cytosol | 16.36 | 24.51 |
CDX81593 | Canola | cytosol | 10.29 | 21.91 |
CDY66612 | Canola | cytosol | 7.92 | 20.55 |
Protein Annotations
EnsemblPlants:CDX91015 | EnsemblPlantsGene:GSBRNA2T00151778001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 |
PANTHER:PTHR31790:SF10 | PFAM:PF00646 | PFAM:PF08268 | ProteinID:CDX91015 | ProteinID:CDX91015.1 | SEG:seg |
SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EDE202 | MapMan:35.1 | : |
Description
BnaC02g05820D
Coordinates
chrLK031865:+:342983..344122
Molecular Weight (calculated)
43345.2 Da
IEP (calculated)
8.429
GRAVY (calculated)
-0.183
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MERPMVDKIM TSQGSKDGVI KGGYSHPIPL ELLFIIFLRL PAKTLARCVC VSKLWASIIR SQDFITSFQS QSRILFFIRD YYQTRFENRF FLSNQQEGTS
101: SFLSRTTCHV SDSRSRCRQP QEVNGLICCG YGTSPVIYNP TSGKSLTLPR IYLGQNVGPY VENILGYDPI NEEYKVLSMT PLPGNHSSDS IIPYKEHKVL
201: TLGSEGLWRM VECNTIHCPG TISVCINGVL YYGAYVGESM KQRSLVRFDV RTEKFGFTKM PESVQTLSYY SSTLMNYNEK IALAYSTGYD TYELWVLKDE
301: WSKMCFSTRL WTQPCIKFNV EGITRMGEII LTPRYGGEFY AVYYNLVTKQ FRKIDIEGYK SPGGVVVSWE YAETSTMLL
101: SFLSRTTCHV SDSRSRCRQP QEVNGLICCG YGTSPVIYNP TSGKSLTLPR IYLGQNVGPY VENILGYDPI NEEYKVLSMT PLPGNHSSDS IIPYKEHKVL
201: TLGSEGLWRM VECNTIHCPG TISVCINGVL YYGAYVGESM KQRSLVRFDV RTEKFGFTKM PESVQTLSYY SSTLMNYNEK IALAYSTGYD TYELWVLKDE
301: WSKMCFSTRL WTQPCIKFNV EGITRMGEII LTPRYGGEFY AVYYNLVTKQ FRKIDIEGYK SPGGVVVSWE YAETSTMLL
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Arabidopsis Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.