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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • plastid 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85577 Canola nucleus, plasma membrane, vacuole 94.99 94.99
Bra023493.1-P Field mustard nucleus, plasma membrane, vacuole 94.46 94.46
CDY49895 Canola cytosol 2.9 40.74
AT1G19160.1 Thale cress cytosol 33.51 36.29
CDX69509 Canola golgi, nucleus, plasma membrane 17.68 34.36
AT5G52610.1 Thale cress golgi, plasma membrane 31.66 34.19
CDY26448 Canola golgi, nucleus, plasma membrane 29.82 32.75
CDX85540 Canola cytosol 25.86 32.67
CDY45366 Canola cytosol 14.78 32.56
CDY28066 Canola cytosol 22.16 29.89
CDY42412 Canola mitochondrion 26.12 29.29
CDY02702 Canola plastid 28.23 28.92
CDX81596 Canola cytosol 27.7 28.77
CDY66614 Canola cytosol, plastid 27.7 28.77
CDY66613 Canola mitochondrion 25.33 27.43
CDY02701 Canola mitochondrion 26.91 27.06
CDY07426 Canola mitochondrion 26.39 26.32
CDX81594 Canola cytosol 16.36 24.51
CDX81593 Canola cytosol 10.29 21.91
CDY66612 Canola cytosol 7.92 20.55
Protein Annotations
EnsemblPlants:CDX91015EnsemblPlantsGene:GSBRNA2T00151778001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-assoc_dom_typ3InterPro:F-box-assoc_interact_domInterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810PANTHER:PTHR31790
PANTHER:PTHR31790:SF10PFAM:PF00646PFAM:PF08268ProteinID:CDX91015ProteinID:CDX91015.1SEG:seg
SMART:SM00256SUPFAM:SSF81383TIGRFAMs:TIGR01640UniParc:UPI0004EDE202MapMan:35.1:
Description
BnaC02g05820D
Coordinates
chrLK031865:+:342983..344122
Molecular Weight (calculated)
43345.2 Da
IEP (calculated)
8.429
GRAVY (calculated)
-0.183
Length
379 amino acids
Sequence
(BLAST)
001: MERPMVDKIM TSQGSKDGVI KGGYSHPIPL ELLFIIFLRL PAKTLARCVC VSKLWASIIR SQDFITSFQS QSRILFFIRD YYQTRFENRF FLSNQQEGTS
101: SFLSRTTCHV SDSRSRCRQP QEVNGLICCG YGTSPVIYNP TSGKSLTLPR IYLGQNVGPY VENILGYDPI NEEYKVLSMT PLPGNHSSDS IIPYKEHKVL
201: TLGSEGLWRM VECNTIHCPG TISVCINGVL YYGAYVGESM KQRSLVRFDV RTEKFGFTKM PESVQTLSYY SSTLMNYNEK IALAYSTGYD TYELWVLKDE
301: WSKMCFSTRL WTQPCIKFNV EGITRMGEII LTPRYGGEFY AVYYNLVTKQ FRKIDIEGYK SPGGVVVSWE YAETSTMLL
Best Arabidopsis Sequence Match ( AT4G11590.1 )
(BLAST)
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Arabidopsis Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.