CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004091.1-P	Field mustard	mitochondrion	100.0	100.0
CDY66613	Canola	mitochondrion	73.68	80.0
CDX81594	Canola	cytosol	52.63	79.05
CDY28066	Canola	cytosol	54.21	73.31
CDY02701	Canola	mitochondrion	71.58	72.15
CDY42412	Canola	mitochondrion	62.63	70.41
CDY66612	Canola	cytosol	26.32	68.49
CDX81596	Canola	cytosol	65.26	67.95
CDY66614	Canola	cytosol, plastid	65.26	67.95
CDY02702	Canola	plastid	66.05	67.84
CDX81593	Canola	cytosol	31.05	66.29
CDX69509	Canola	golgi, nucleus, plasma membrane	18.95	36.92
AT1G31000.1	Thale cress	cytosol	32.63	33.97
CDX85540	Canola	cytosol	26.05	33.0
CDY26448	Canola	golgi, nucleus, plasma membrane	28.42	31.3
CDX85577	Canola	nucleus, plasma membrane, vacuole	27.89	27.97
CDY45366	Canola	cytosol	12.11	26.74
CDX91015	Canola	cytosol, plasma membrane, vacuole	26.32	26.39
CDY49895	Canola	cytosol	1.58	22.22

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078F218	EnsemblPlants:CDY07426	ProteinID:CDY07426	ProteinID:CDY07426.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00124417001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000254138B
SEG:seg	:	:	:	:	:

Description

BnaA07g25050DBnaA07g25050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F218]

Coordinates

chrLK031978:-:651226..652368

Molecular Weight (calculated)

43487.0 Da

IEP (calculated)

9.762

GRAVY (calculated)

-0.067

Length

380 amino acids

Sequence
(BLAST)

001: MIRRSLRLCN KRRTYVVPLD LQIEILSRLP SKSVVRFMLV SKSWQEIISS KSFIRLRSLT QPLRFLLALH DRDNQTGRLS CSFFSSSSLS SSSPLISTTF
101: LSRITFPLRR ASYPSYYVNG LINVGEIICN PCTGKTISLP KLVKTTATSK PRLARRFFGY DPVNNQYKVL CITPDLAGHA TLEFNHYQIF TLGAKPKTWR
201: FIDCGIPHGI WCNGLCIDGF VYYIASTDVG MMCLMRFDLN SEKFNIYARV SEEMKALYFH HNGSRTLINY HGKVAIAIQP SHSVPSIDLF VFEAGKQDYK
301: EKSFYNLPQL HLRMKCVSNH MGDIIFAPSC SRSEFSVIHH DVKGAIFTKM KLEVDVKQDW FNDSSCFVDY VESPMLIKAR

Best Arabidopsis Sequence Match ( AT5G15660.1 )
(BLAST)

001: MRRRSKKIKT ENNSNPETSE ERNKFDEIPH DLVIEILERL PLKSVARFLT VSKLWATTIR SPDFRKSYRG GSSSEPRTLI VSDLNFKEPN PKLHFFRPSI
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE

Arabidopsis Description

Putative F-box protein At5g15660 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.