Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81593 | Canola | cytosol | 97.95 | 80.34 |
| CDX81594 | Canola | cytosol | 69.86 | 40.32 |
| CDY66613 | Canola | mitochondrion | 70.55 | 29.43 |
| CDY02701 | Canola | mitochondrion | 69.18 | 26.79 |
| CDY07426 | Canola | mitochondrion | 68.49 | 26.32 |
| CDY66614 | Canola | cytosol, plastid | 65.75 | 26.3 |
| CDX81596 | Canola | cytosol | 65.75 | 26.3 |
| CDY02702 | Canola | plastid | 66.44 | 26.22 |
| CDY42412 | Canola | mitochondrion | 48.63 | 21.01 |
| CDY45366 | Canola | cytosol | 16.44 | 13.95 |
| CDX85540 | Canola | cytosol | 26.03 | 12.67 |
| AT1G31000.1 | Thale cress | cytosol | 30.82 | 12.33 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 23.29 | 9.86 |
| CDY28066 | Canola | cytosol | 17.81 | 9.25 |
| CDX85577 | Canola | nucleus, plasma membrane, vacuole | 23.29 | 8.97 |
| CDX91015 | Canola | cytosol, plasma membrane, vacuole | 20.55 | 7.92 |
| CDY49895 | Canola | cytosol | 0.68 | 3.7 |
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY66612 | EnsemblPlantsGene:GSBRNA2T00054644001 | InterPro:F-box-assoc_dom_typ3 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | PFAM:PF08268 |
| ProteinID:CDY66612 | ProteinID:CDY66612.1 | UniParc:UPI0004EDCD22 | UniProt:A0A078JML6 | MapMan:35.2 | : |
Description
BnaUnng01590DBnaUnng01590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JML6]
Coordinates
chrLK035357:+:4002..4442
Molecular Weight (calculated)
16626.4 Da
IEP (calculated)
9.853
GRAVY (calculated)
-0.069
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVMRFDLKS EKFDIFARVS EKLKSLFFPG NGSRNLVNYH GKVAIAIRSS RSVPSIDLFV FEAGKQDYKE KSIDNLPPLH LRMKGVINHT GGIIFAPSYF
101: GSEVTLFHHD PKGARFKKMA FEVDAKHVWL TVSNCYMGYV ESLMLM
101: GSEVTLFHHD PKGARFKKMA FEVDAKHVWL TVSNCYMGYV ESLMLM
001: MRMTRRRTKK TEIRNDSDSV RIDIVIEIVK RLPLKDVSRF LLVSKLWSEI IRSPYFIRSF PFLFSSIQPH LLYALNSLDK DKGHHKCCDI HYVSGLICFG
101: YGQQQLITNP RTGKSIYLPK VKSRSKIIQS FFGYDPVYGQ YKVLCMSERM NDYLNVPSSE HQVFTLGGVQ KVEQSWRMIE CNIHHRPKTN SVCMDGVLYY
201: GAFTGGDMLE WCLMRFDVRT EKLDLVSRLN ESSIQCYRPG HSPSLIKYHG KVALAFETSL HTFELWVMED AEKWSKIRFS ICHSMHLFGQ DDDDAFLITG
301: NIHTGEIIFA PYDCDVRFGM THVVYYDLKT NRLRFRTVAF DLGTLFPQIS VMVPFFDYVE SAMLL
101: YGQQQLITNP RTGKSIYLPK VKSRSKIIQS FFGYDPVYGQ YKVLCMSERM NDYLNVPSSE HQVFTLGGVQ KVEQSWRMIE CNIHHRPKTN SVCMDGVLYY
201: GAFTGGDMLE WCLMRFDVRT EKLDLVSRLN ESSIQCYRPG HSPSLIKYHG KVALAFETSL HTFELWVMED AEKWSKIRFS ICHSMHLFGQ DDDDAFLITG
301: NIHTGEIIFA PYDCDVRFGM THVVYYDLKT NRLRFRTVAF DLGTLFPQIS VMVPFFDYVE SAMLL
Arabidopsis Description
Putative F-box protein At1g31000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.