CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81594	Canola	cytosol	62.57	86.56
CDY07426	Canola	mitochondrion	80.0	73.68
CDY66612	Canola	cytosol	29.43	70.55
CDX81593	Canola	cytosol	34.86	68.54
CDY02701	Canola	mitochondrion	71.43	66.31
CDY66614	Canola	cytosol, plastid	68.29	65.48
CDX81596	Canola	cytosol	67.71	64.93
CDY02702	Canola	plastid	68.57	64.86
CDY42412	Canola	mitochondrion	62.0	64.2
CDY28066	Canola	cytosol	48.86	60.85
CDX69509	Canola	golgi, nucleus, plasma membrane	18.86	33.85
AT1G31000.1	Thale cress	cytosol	34.57	33.15
CDY26448	Canola	golgi, nucleus, plasma membrane	30.0	30.43
CDY49895	Canola	cytosol	2.29	29.63
CDX85540	Canola	cytosol	24.29	28.33
CDX85577	Canola	nucleus, plasma membrane, vacuole	29.14	26.91
CDY45366	Canola	cytosol	12.57	25.58
CDX91015	Canola	cytosol, plasma membrane, vacuole	27.43	25.33

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JG69	EnsemblPlants:CDY66613	ProteinID:CDY66613	ProteinID:CDY66613.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00054645001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646
PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EE9A92	SEG:seg	:	:	:

Description

BnaUnng01600DBnaUnng01600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG69]

Coordinates

chrLK035357:+:5442..6723

Molecular Weight (calculated)

40363.3 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.071

Length

350 amino acids

Sequence
(BLAST)

001: MIRRSLRLCN KRRTYVVPLD LQIEILSRLP SESVVRIMLV SKSWREIILS KSFMRLRSLT QPLRFLLALQ DIDYQTGRIN CSFFSSSSLS YYVNGLINIG
101: EFICNPCNGK TVSLPKLVKI TAASRRRITE RFFGYDPVNN QYKVLCITMH PVGRATQSYF QVFTLGAKPK TWRFIDCGIP HTTLSKGLCI DGFVYYIART
201: DARMMCLMRF DLNSEKFNIY ARVSEEMKAL YFRDNGSRTL LNYHGKVAVA IQPSHSVPSI DLFIFEAGKQ DYKEKSFDNL PQLHLRVKGV INHMGDIIFA
301: PSCSEGDDIV IIHHDLKGAS FKKMKFEVAN HDWFNESNYF MGYVESLMLI

Best Arabidopsis Sequence Match ( AT1G31000.1 )
(BLAST)

001: MRMTRRRTKK TEIRNDSDSV RIDIVIEIVK RLPLKDVSRF LLVSKLWSEI IRSPYFIRSF PFLFSSIQPH LLYALNSLDK DKGHHKCCDI HYVSGLICFG
101: YGQQQLITNP RTGKSIYLPK VKSRSKIIQS FFGYDPVYGQ YKVLCMSERM NDYLNVPSSE HQVFTLGGVQ KVEQSWRMIE CNIHHRPKTN SVCMDGVLYY
201: GAFTGGDMLE WCLMRFDVRT EKLDLVSRLN ESSIQCYRPG HSPSLIKYHG KVALAFETSL HTFELWVMED AEKWSKIRFS ICHSMHLFGQ DDDDAFLITG
301: NIHTGEIIFA PYDCDVRFGM THVVYYDLKT NRLRFRTVAF DLGTLFPQIS VMVPFFDYVE SAMLL

Arabidopsis Description

Putative F-box protein At1g31000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.