Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66612 | Canola | cytosol | 80.34 | 97.95 |
| CDX81594 | Canola | cytosol | 67.42 | 47.43 |
| CDY66613 | Canola | mitochondrion | 68.54 | 34.86 |
| CDY07426 | Canola | mitochondrion | 66.29 | 31.05 |
| CDY02701 | Canola | mitochondrion | 65.17 | 30.77 |
| CDY66614 | Canola | cytosol, plastid | 62.36 | 30.41 |
| CDX81596 | Canola | cytosol | 62.36 | 30.41 |
| CDY02702 | Canola | plastid | 61.8 | 29.73 |
| CDY42412 | Canola | mitochondrion | 50.0 | 26.33 |
| CDY45366 | Canola | cytosol | 18.54 | 19.19 |
| CDX85540 | Canola | cytosol | 26.97 | 16.0 |
| CDY28066 | Canola | cytosol | 24.16 | 15.3 |
| AT1G31000.1 | Thale cress | cytosol | 30.9 | 15.07 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 25.84 | 13.33 |
| CDX85577 | Canola | nucleus, plasma membrane, vacuole | 24.72 | 11.61 |
| CDX91015 | Canola | cytosol, plasma membrane, vacuole | 21.91 | 10.29 |
| CDY49895 | Canola | cytosol | 1.12 | 7.41 |
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 1.69 | 1.54 |
Protein Annotations
| EnsemblPlants:CDX81593 | EnsemblPlantsGene:GSBRNA2T00135323001 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| PFAM:PF08268 | ProteinID:CDX81593 | ProteinID:CDX81593.1 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EEF248 | MapMan:35.2 |
Description
BnaC02g18970D
Coordinates
chrLK031825:+:1862177..1862713
Molecular Weight (calculated)
20250.5 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.030
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIYRLWHSS QHFSDGLCID GFVYYIASTG TDMCVMRFDL KSEKFDIFAR VSEKLKALFF PGNGSRNLVN YHGKVAIAIR SSRSVPSIDL FVFEAGKQDY
101: KEKSIDNLPP LHLRMKGVIN HTGGIIFAPS YFGSEITLFH HDPKGASFKK MAFEVDAKHV WLTVSNCYMG YVESLMLM
101: KEKSIDNLPP LHLRMKGVIN HTGGIIFAPS YFGSEITLFH HDPKGASFKK MAFEVDAKHV WLTVSNCYMG YVESLMLM
001: MRMTRRRTKK TEIRNDSDSV RIDIVIEIVK RLPLKDVSRF LLVSKLWSEI IRSPYFIRSF PFLFSSIQPH LLYALNSLDK DKGHHKCCDI HYVSGLICFG
101: YGQQQLITNP RTGKSIYLPK VKSRSKIIQS FFGYDPVYGQ YKVLCMSERM NDYLNVPSSE HQVFTLGGVQ KVEQSWRMIE CNIHHRPKTN SVCMDGVLYY
201: GAFTGGDMLE WCLMRFDVRT EKLDLVSRLN ESSIQCYRPG HSPSLIKYHG KVALAFETSL HTFELWVMED AEKWSKIRFS ICHSMHLFGQ DDDDAFLITG
301: NIHTGEIIFA PYDCDVRFGM THVVYYDLKT NRLRFRTVAF DLGTLFPQIS VMVPFFDYVE SAMLL
101: YGQQQLITNP RTGKSIYLPK VKSRSKIIQS FFGYDPVYGQ YKVLCMSERM NDYLNVPSSE HQVFTLGGVQ KVEQSWRMIE CNIHHRPKTN SVCMDGVLYY
201: GAFTGGDMLE WCLMRFDVRT EKLDLVSRLN ESSIQCYRPG HSPSLIKYHG KVALAFETSL HTFELWVMED AEKWSKIRFS ICHSMHLFGQ DDDDAFLITG
301: NIHTGEIIFA PYDCDVRFGM THVVYYDLKT NRLRFRTVAF DLGTLFPQIS VMVPFFDYVE SAMLL
Arabidopsis Description
Putative F-box protein At1g31000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.