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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07426 Canola mitochondrion 73.31 54.21
CDY66613 Canola mitochondrion 60.85 48.86
CDY42412 Canola mitochondrion 58.36 48.52
CDY02701 Canola mitochondrion 63.35 47.21
CDY66614 Canola cytosol, plastid 60.5 46.58
CDY02702 Canola plastid 61.21 46.49
CDX81596 Canola cytosol 59.79 46.03
CDX81594 Canola cytosol 36.3 40.32
CDX69509 Canola golgi, nucleus, plasma membrane 23.49 33.85
AT1G31000.1 Thale cress cytosol 34.88 26.85
CDY49895 Canola cytosol 2.49 25.93
CDY26448 Canola golgi, nucleus, plasma membrane 30.96 25.22
CDX85540 Canola cytosol 25.98 24.33
CDX81593 Canola cytosol 15.3 24.16
CDX85577 Canola nucleus, plasma membrane, vacuole 30.61 22.69
CDX91015 Canola cytosol, plasma membrane, vacuole 29.89 22.16
CDY45366 Canola cytosol 12.46 20.35
CDY66612 Canola cytosol 9.25 17.81
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1UniProt:A0A078GRM6EnsemblPlants:CDY28066ProteinID:CDY28066ProteinID:CDY28066.1
InterPro:F-box-assoc_dom_typ3InterPro:F-box-assoc_interact_domInterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488
GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00039008001InterPro:IPR001810PFAM:PF00646PFAM:PF08268PFscan:PS50181
PANTHER:PTHR31790PANTHER:PTHR31790:SF10SMART:SM00256SUPFAM:SSF81383TIGRFAMs:TIGR01640UniParc:UPI0004EEEDB0
SEG:seg:::::
Description
BnaC05g44680DBnaC05g44680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRM6]
Coordinates
chrLK032213:+:456162..457007
Molecular Weight (calculated)
32117.2 Da
IEP (calculated)
9.596
GRAVY (calculated)
0.046
Length
281 amino acids
Sequence
(BLAST)
001: MIQGSLRLCN KGTNVVVPLD LQIEILSRLP SKSLVRFMLV SKSWQEIISS KSFIRLRSLI HPLRFLLVLN ENCDQTGHLS VSFFSSSSMS LSSTSISTTF
101: LSKITFPLRQ AAYPIYYVNG LINIGDIICN PCTGKTISLP KLAASGESIR RRFFGYDPVN NQYKVLWITQ NLERHATPQF NRYHVFTLGA KPKKWRLIDC
201: GIPHTDWSNC LCIDGFVYYI ASTDTGLMCL MKFDLSSEKF YIFARVYEEM EALLLRAYSC RTLINYHGKV RKTGLQSEVF Q
Best Arabidopsis Sequence Match ( AT5G15660.1 )
(BLAST)
001: MRRRSKKIKT ENNSNPETSE ERNKFDEIPH DLVIEILERL PLKSVARFLT VSKLWATTIR SPDFRKSYRG GSSSEPRTLI VSDLNFKEPN PKLHFFRPSI
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE
Arabidopsis Description
Putative F-box protein At5g15660 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.