Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY07426 | Canola | mitochondrion | 73.31 | 54.21 |
CDY66613 | Canola | mitochondrion | 60.85 | 48.86 |
CDY42412 | Canola | mitochondrion | 58.36 | 48.52 |
CDY02701 | Canola | mitochondrion | 63.35 | 47.21 |
CDY66614 | Canola | cytosol, plastid | 60.5 | 46.58 |
CDY02702 | Canola | plastid | 61.21 | 46.49 |
CDX81596 | Canola | cytosol | 59.79 | 46.03 |
CDX81594 | Canola | cytosol | 36.3 | 40.32 |
CDX69509 | Canola | golgi, nucleus, plasma membrane | 23.49 | 33.85 |
AT1G31000.1 | Thale cress | cytosol | 34.88 | 26.85 |
CDY49895 | Canola | cytosol | 2.49 | 25.93 |
CDY26448 | Canola | golgi, nucleus, plasma membrane | 30.96 | 25.22 |
CDX85540 | Canola | cytosol | 25.98 | 24.33 |
CDX81593 | Canola | cytosol | 15.3 | 24.16 |
CDX85577 | Canola | nucleus, plasma membrane, vacuole | 30.61 | 22.69 |
CDX91015 | Canola | cytosol, plasma membrane, vacuole | 29.89 | 22.16 |
CDY45366 | Canola | cytosol | 12.46 | 20.35 |
CDY66612 | Canola | cytosol | 9.25 | 17.81 |
Protein Annotations
Gene3D:1.20.1280.50 | MapMan:35.1 | UniProt:A0A078GRM6 | EnsemblPlants:CDY28066 | ProteinID:CDY28066 | ProteinID:CDY28066.1 |
InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00039008001 | InterPro:IPR001810 | PFAM:PF00646 | PFAM:PF08268 | PFscan:PS50181 |
PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EEEDB0 |
SEG:seg | : | : | : | : | : |
Description
BnaC05g44680DBnaC05g44680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRM6]
Coordinates
chrLK032213:+:456162..457007
Molecular Weight (calculated)
32117.2 Da
IEP (calculated)
9.596
GRAVY (calculated)
0.046
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQGSLRLCN KGTNVVVPLD LQIEILSRLP SKSLVRFMLV SKSWQEIISS KSFIRLRSLI HPLRFLLVLN ENCDQTGHLS VSFFSSSSMS LSSTSISTTF
101: LSKITFPLRQ AAYPIYYVNG LINIGDIICN PCTGKTISLP KLAASGESIR RRFFGYDPVN NQYKVLWITQ NLERHATPQF NRYHVFTLGA KPKKWRLIDC
201: GIPHTDWSNC LCIDGFVYYI ASTDTGLMCL MKFDLSSEKF YIFARVYEEM EALLLRAYSC RTLINYHGKV RKTGLQSEVF Q
101: LSKITFPLRQ AAYPIYYVNG LINIGDIICN PCTGKTISLP KLAASGESIR RRFFGYDPVN NQYKVLWITQ NLERHATPQF NRYHVFTLGA KPKKWRLIDC
201: GIPHTDWSNC LCIDGFVYYI ASTDTGLMCL MKFDLSSEKF YIFARVYEEM EALLLRAYSC RTLINYHGKV RKTGLQSEVF Q
001: MRRRSKKIKT ENNSNPETSE ERNKFDEIPH DLVIEILERL PLKSVARFLT VSKLWATTIR SPDFRKSYRG GSSSEPRTLI VSDLNFKEPN PKLHFFRPSI
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE
Arabidopsis Description
Putative F-box protein At5g15660 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.