CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69509	Canola	golgi, nucleus, plasma membrane	30.43	53.85
AT5G15670.1	Thale cress	cytosol	33.04	53.27
AT1G26515.1	Thale cress	nucleus	42.61	40.16
AT1G26510.1	Thale cress	nucleus	44.93	39.04
CDX85540	Canola	cytosol	33.04	38.0
CDY49895	Canola	cytosol	2.9	37.04
AT5G15660.1	Thale cress	cytosol	43.19	34.02
CDY45366	Canola	cytosol	16.23	32.56
CDY42412	Canola	mitochondrion	31.59	32.25
CDY28066	Canola	cytosol	25.22	30.96
CDX85577	Canola	nucleus, plasma membrane, vacuole	33.62	30.61
CDY02701	Canola	mitochondrion	33.04	30.24
CDX81594	Canola	cytosol	22.03	30.04
CDY66613	Canola	mitochondrion	30.43	30.0
CDX91015	Canola	cytosol, plasma membrane, vacuole	32.75	29.82
CDY02702	Canola	plastid	30.72	28.65
CDY66614	Canola	cytosol, plastid	30.14	28.49
CDY07426	Canola	mitochondrion	31.3	28.42
CDX81596	Canola	cytosol	29.57	27.95
CDX81593	Canola	cytosol	13.33	25.84
CDY66612	Canola	cytosol	9.86	23.29

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078GP65	EnsemblPlants:CDY26448	ProteinID:CDY26448	ProteinID:CDY26448.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00035243001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EED92C

Description

BnaC09g42200DBnaC09g42200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP65]

Coordinates

chrLK032190:+:212505..213692

Molecular Weight (calculated)

39252.3 Da

IEP (calculated)

9.019

GRAVY (calculated)

-0.122

Length

345 amino acids

Sequence
(BLAST)

001: MMMTTGSKKN KTTVTINPQA SSYDVLPLDL LMEIIGRLPV KSIARFLLVC KLWATTIRSR DFIKSFPLGS CSSHEPRFLI AFNEQFIVNP TTGKSIALPR
101: VRTRRKVVKS FFGYDSVSDE YKVLCMSEAH NGPNFLGPSS QHQIFTLGAK KRSWRMVECS IPHCPCSSGV CIDGVIYYMA KTGTANLSQL SLVSFDSRCD
201: KFDLVTGVSP EILLNENQFS HVVILNFEGK VAITTKTTHT FDVWVMDQNA EERKWLKKLT FSVEPWKSLF HSPSSVSIKG ITQTGEFILV PYYYNSYDVY
301: VGLYNHYTDT FRKVKAEGNE DNDFIKRNYV RGIFFSDCIE SVRFL

Best Arabidopsis Sequence Match ( AT5G15660.1 )
(BLAST)

001: MRRRSKKIKT ENNSNPETSE ERNKFDEIPH DLVIEILERL PLKSVARFLT VSKLWATTIR SPDFRKSYRG GSSSEPRTLI VSDLNFKEPN PKLHFFRPSI
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE

Arabidopsis Description

Putative F-box protein At5g15660 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.