Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G26510.1 | Thale cress | nucleus | 66.12 | 60.96 |
| AT5G15670.1 | Thale cress | cytosol | 32.24 | 55.14 |
| AT5G15660.1 | Thale cress | cytosol | 55.74 | 46.58 |
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 24.59 | 46.15 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 45.36 | 43.12 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 40.16 | 42.61 |
| AT4G11590.1 | Thale cress | cytosol | 45.63 | 42.07 |
| AT1G31000.1 | Thale cress | cytosol | 33.61 | 33.7 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 31.42 | 32.76 |
| AT1G47800.1 | Thale cress | cytosol | 30.05 | 28.42 |
| AT1G19160.1 | Thale cress | cytosol | 26.23 | 27.43 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 25.68 | 26.78 |
Protein Annotations
| EntrezGene:10723080 | MapMan:35.1 | ProteinID:AAF98567.1 | ProteinID:AEE30699.1 | ArrayExpress:AT1G26515 | EnsemblPlantsGene:AT1G26515 |
| RefSeq:AT1G26515 | TAIR:AT1G26515 | RefSeq:AT1G26515-TAIR-G | EnsemblPlants:AT1G26515.1 | TAIR:AT1G26515.1 | Unigene:At.75556 |
| InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | RefSeq:NP_001185100.1 | PFAM:PF00646 | PFAM:PF08268 | PANTHER:PTHR31790 |
| PANTHER:PTHR31790:SF10 | UniProt:Q9FZD6 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A83F3 | SEG:seg |
Description
Putative F-box protein At1g26515 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD6]
Coordinates
chr1:-:9161810..9162910
Molecular Weight (calculated)
42252.5 Da
IEP (calculated)
8.944
GRAVY (calculated)
-0.428
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRSKKTKT ENNQEKSKEK NKFDQLPLDL EIEIFRRLPL KSVARFLTLS KSCAATIRSP SFITSFRSPQ PCTLIASAPI FNCLHPFKPR VLVDHKLSFF
101: SSSSSSSSST SFLSRLTCPS SPYPRHMEYY CHYVNGLISV GYGREQIVTN PSTGRFITLP SVRTKRRLVK SFFGYDPASD QYKVLCMTER LYGHQEDPSS
201: QHQVFTLGVK KPWKMLDRTT IPDHRPWTNG VCIDGVVYYI AKTGQGMSQL SLMRYDLRDD NLNVFISLPE EIRTPSLYSD TLLNYEGKLA IAIPVTSYIF
301: DVWVMDQDGE KHEWLKKITF NIEPWQSSFD DIRIKGTTLT GEFIFAPMNN YCDDEFYVFH YKSQQE
101: SSSSSSSSST SFLSRLTCPS SPYPRHMEYY CHYVNGLISV GYGREQIVTN PSTGRFITLP SVRTKRRLVK SFFGYDPASD QYKVLCMTER LYGHQEDPSS
201: QHQVFTLGVK KPWKMLDRTT IPDHRPWTNG VCIDGVVYYI AKTGQGMSQL SLMRYDLRDD NLNVFISLPE EIRTPSLYSD TLLNYEGKLA IAIPVTSYIF
301: DVWVMDQDGE KHEWLKKITF NIEPWQSSFD DIRIKGTTLT GEFIFAPMNN YCDDEFYVFH YKSQQE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.