Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G15670.1 | Thale cress | cytosol | 33.1 | 67.76 |
| AT1G26515.1 | Thale cress | nucleus | 46.58 | 55.74 |
| AT1G26510.1 | Thale cress | nucleus | 46.12 | 50.88 |
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 20.78 | 46.67 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 40.64 | 46.23 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 34.02 | 43.19 |
| AT4G11590.1 | Thale cress | cytosol | 39.04 | 43.07 |
| AT1G31000.1 | Thale cress | cytosol | 31.96 | 38.36 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 26.26 | 32.76 |
| AT1G47800.1 | Thale cress | cytosol | 27.17 | 30.75 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 23.97 | 29.91 |
| AT1G19160.1 | Thale cress | cytosol | 23.06 | 28.86 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831420 | UniProt:A0A178UD40 | ProteinID:AED92189.1 | ArrayExpress:AT5G15660 | EnsemblPlantsGene:AT5G15660 |
| RefSeq:AT5G15660 | TAIR:AT5G15660 | RefSeq:AT5G15660-TAIR-G | EnsemblPlants:AT5G15660.1 | TAIR:AT5G15660.1 | Unigene:At.54856 |
| ProteinID:CAC01765.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | RefSeq:NP_197070.1 |
| ProteinID:OAO91605.1 | PFAM:PF00646 | PFAM:PF08268 | PO:PO:0000293 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| UniProt:Q9LFW0 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A3BEE |
| SEG:seg | : | : | : | : | : |
Description
Putative F-box protein At5g15660 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW0]
Coordinates
chr5:+:5095652..5097041
Molecular Weight (calculated)
50914.7 Da
IEP (calculated)
9.491
GRAVY (calculated)
-0.456
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRRSKKIKT ENNSNPETSE ERNKFDEIPH DLVIEILERL PLKSVARFLT VSKLWATTIR SPDFRKSYRG GSSSEPRTLI VSDLNFKEPN PKLHFFRPSI
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.