Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 59.14 | 58.97 |
| CDX85577 | Canola | nucleus, plasma membrane, vacuole | 37.14 | 34.3 |
| Bra023493.1-P | Field mustard | nucleus, plasma membrane, vacuole | 36.29 | 33.51 |
| CDX91015 | Canola | cytosol, plasma membrane, vacuole | 36.29 | 33.51 |
| AT1G31000.1 | Thale cress | cytosol | 33.14 | 31.78 |
| AT5G15670.1 | Thale cress | cytosol | 19.14 | 31.31 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 31.14 | 31.05 |
| AT4G11590.1 | Thale cress | cytosol | 33.43 | 29.47 |
| AT1G47800.1 | Thale cress | cytosol | 30.29 | 27.39 |
| AT1G26515.1 | Thale cress | nucleus | 27.43 | 26.23 |
| AT1G26510.1 | Thale cress | nucleus | 26.29 | 23.17 |
| AT5G15660.1 | Thale cress | cytosol | 28.86 | 23.06 |
Protein Annotations
| MapMan:35.1 | EntrezGene:838499 | ProteinID:AAF82227.1 | ProteinID:AEE29812.1 | ArrayExpress:AT1G19160 | EnsemblPlantsGene:AT1G19160 |
| RefSeq:AT1G19160 | TAIR:AT1G19160 | RefSeq:AT1G19160-TAIR-G | EnsemblPlants:AT1G19160.1 | TAIR:AT1G19160.1 | Unigene:At.66894 |
| InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_173350.2 | PFAM:PF00646 | PFAM:PF08268 |
| PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9LMB0 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A667A | : | : | : |
Description
Putative F-box protein At1g19160 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMB0]
Coordinates
chr1:-:6614087..6615214
Molecular Weight (calculated)
40403.8 Da
IEP (calculated)
6.504
GRAVY (calculated)
0.027
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPEDPLVEI LLRLPVKSLA RFLCVSKRCY SIIRSRHFIN LYQSRASTRE SRVMFAFRDT NTFFRWNFFS LSQPPSSVTN IDSTSYCMPV CVNGLICVEH
101: MFRLWICNPV TKKITLFPDC GPRKQFTTWY MGYDPINYQY KVLYLSREHL IAPYIVEVFT FGDEGSWRMI EADENFHSPE TRGVCTHGVL YYGAYTGDGA
201: KIVRFDVRTE KFGKFIEMPA EACSIHGVYL GLYTLLDYQG KLGLLATQAT STYDLWVLED AEKHEWSKVS IFITREMCPY DLIWPGVVGF VAGSGELIVT
301: ARDELGQFHI LYVDLKKNRS REVWFEEITP SFGSALVLAF TDYVESIVLM
101: MFRLWICNPV TKKITLFPDC GPRKQFTTWY MGYDPINYQY KVLYLSREHL IAPYIVEVFT FGDEGSWRMI EADENFHSPE TRGVCTHGVL YYGAYTGDGA
201: KIVRFDVRTE KFGKFIEMPA EACSIHGVYL GLYTLLDYQG KLGLLATQAT STYDLWVLED AEKHEWSKVS IFITREMCPY DLIWPGVVGF VAGSGELIVT
301: ARDELGQFHI LYVDLKKNRS REVWFEEITP SFGSALVLAF TDYVESIVLM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.