Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 35.05 | 38.46 |
| AT5G15660.1 | Thale cress | cytosol | 67.76 | 33.1 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 53.27 | 33.04 |
| AT1G26515.1 | Thale cress | nucleus | 55.14 | 32.24 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 54.21 | 30.13 |
| AT1G26510.1 | Thale cress | nucleus | 53.74 | 28.97 |
| AT1G31000.1 | Thale cress | cytosol | 45.79 | 26.85 |
| AT4G11590.1 | Thale cress | cytosol | 47.66 | 25.69 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 37.38 | 22.79 |
| AT1G47800.1 | Thale cress | cytosol | 38.32 | 21.19 |
| AT1G19160.1 | Thale cress | cytosol | 31.31 | 19.14 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 29.91 | 18.23 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831421 | UniProt:A0A178UTG9 | ProteinID:AED92190.1 | ArrayExpress:AT5G15670 | EnsemblPlantsGene:AT5G15670 |
| RefSeq:AT5G15670 | TAIR:AT5G15670 | RefSeq:AT5G15670-TAIR-G | EnsemblPlants:AT5G15670.1 | TAIR:AT5G15670.1 | Unigene:At.54857 |
| ProteinID:CAC01766.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_197071.1 | ProteinID:OAO96041.1 |
| PFAM:PF00646 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9LFV9 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A4646 | : | : | : |
Description
Putative F-box protein At5g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV9]
Coordinates
chr5:+:5099595..5100407
Molecular Weight (calculated)
24101.4 Da
IEP (calculated)
10.434
GRAVY (calculated)
-0.211
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRRRNKKTK TVISNPETLE ERNKFDEIPH DLVIEILGRL PAKSVARFLT VSKLWATSIR SLDFIKSYPL GSSSKPRTLV ASKQVVANPS TGRTIPLPRV
101: KTRRTIATSF FGYDSVSDQY KVLCMTVKAY GDLRDESSQH QVFTLGAKKK SFRMIDTSII PHRPCSNGVC IDSVVYYVAK TGAGMLHLCI MRFDLSSEIL
201: DLFTSLPQEI RPPS
101: KTRRTIATSF FGYDSVSDQY KVLCMTVKAY GDLRDESSQH QVFTLGAKKK SFRMIDTSII PHRPCSNGVC IDSVVYYVAK TGAGMLHLCI MRFDLSSEIL
201: DLFTSLPQEI RPPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.