Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G26515.1 | Thale cress | nucleus | 60.96 | 66.12 |
| AT5G15670.1 | Thale cress | cytosol | 28.97 | 53.74 |
| AT5G15660.1 | Thale cress | cytosol | 50.88 | 46.12 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 39.04 | 44.93 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 43.32 | 44.68 |
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 21.91 | 44.62 |
| AT4G11590.1 | Thale cress | cytosol | 42.32 | 42.32 |
| AT1G31000.1 | Thale cress | cytosol | 32.49 | 35.34 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 26.45 | 29.91 |
| AT1G47800.1 | Thale cress | cytosol | 27.96 | 28.68 |
| AT1G19160.1 | Thale cress | cytosol | 23.17 | 26.29 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 22.92 | 25.93 |
Protein Annotations
| MapMan:35.1 | EntrezGene:839191 | ProteinID:AAF98568.1 | ProteinID:AEE30698.1 | ArrayExpress:AT1G26510 | EnsemblPlantsGene:AT1G26510 |
| RefSeq:AT1G26510 | TAIR:AT1G26510 | RefSeq:AT1G26510-TAIR-G | EnsemblPlants:AT1G26510.1 | TAIR:AT1G26510.1 | Unigene:At.51773 |
| InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | RefSeq:NP_173973.2 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9FZD5 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | TMHMM:TMhelix | UniParc:UPI0001E92AA0 | SEG:seg | : |
Description
Putative F-box protein At1g26510 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD5]
Coordinates
chr1:-:9159851..9161044
Molecular Weight (calculated)
45721.8 Da
IEP (calculated)
9.865
GRAVY (calculated)
-0.377
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRSKKTKT VNNNNDLQKS EEKQKFDQLP LDLEIEMFRR LPLKSVARFL TLSKSCATTI RSPSFITSFP SQPCTLIASA ATIRTCHNLP SSFKSKDQRL
101: YFFSSSSSSS TVFSTRLTCP LSPYDNLIEY YYHYASGLIS IGCNRKQIVT NPSTGRFITL PSVRRRRVVV KSFFGYDPVS DQYKVSCMTE RRHGLRQDPS
201: SEHQVFTLGE KKPWKMIDCT SIPDHRPWSN GVCIDGFVYY VAKTGQGMSQ LSLMRYALRA DNLNLFTSLP EELRTLKLSG DTLLNYEGNV AWPLQLHLIF
301: NVWVMDQDGE KHEWLKKITF NIEPWKSSSR YLDVRGTTHT GEFILAPSHY PDDEFYVFHY NLGKNSFTKK KLQVRIYNVR IVSTSSIIGL YLSFSLL
101: YFFSSSSSSS TVFSTRLTCP LSPYDNLIEY YYHYASGLIS IGCNRKQIVT NPSTGRFITL PSVRRRRVVV KSFFGYDPVS DQYKVSCMTE RRHGLRQDPS
201: SEHQVFTLGE KKPWKMIDCT SIPDHRPWSN GVCIDGFVYY VAKTGQGMSQ LSLMRYALRA DNLNLFTSLP EELRTLKLSG DTLLNYEGNV AWPLQLHLIF
301: NVWVMDQDGE KHEWLKKITF NIEPWKSSSR YLDVRGTTHT GEFILAPSHY PDDEFYVFHY NLGKNSFTKK KLQVRIYNVR IVSTSSIIGL YLSFSLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.